SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G20990 | AT | Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 4 | chr4:11219772-11221126 FORWARD LENGTH=267 | SoyBase | E_val: 3.00E-98 | ISS |
| GO:0006730 | GO-bp | Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0004089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0382 | KOG | Carbonic anhydrase | JGI | ISS | |
| PTHR18952 | Panther | CARBONIC ANHYDRASE | JGI | ISS | |
| PTHR18952:SF2 | Panther | gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v, | JGI | ISS | |
| PF00194 | PFAM | Eukaryotic-type carbonic anhydrase | JGI | ISS | |
| UniRef100_G7KSM1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 n=1 Tax=Medicago truncatula RepID=G7KSM1_MEDTR | SoyBase | E_val: 5.00E-112 | ISS |
| UniRef100_UPI000233ECF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233ECF2 related cluster n=1 Tax=unknown RepID=UPI000233ECF2 | SoyBase | E_val: 0 | ISS |
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Glyma19g31870 not represented in the dataset |
Glyma19g31870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g137100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g31870.1 sequence type=CDS gene model=Glyma19g31870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAATGGTGCAAAGAAGATGAACGGGTTGAAAAAAGATGAAGAATATACCTACGCTATAGGAAGTAGCACAGGGCCAGAGAATTGGTGGCGTATCAACCAAAAATGGAAAACATGTGGGGATGGAAAACTACAATCTCCCATTGATCTGCTTGACCAAAGGGTTCAAGAGCTTCCTCAATTGGGTAAACTTAAGAAAGCTTACAAATCAGCTCCTGCTGTCCTAAAGAATAGGGGTCATGACATCGTGCTGGAATGGAAAGGAGATGCAGGCCAGCTTAACATAAATGAAACTTACTATAATCTGATTCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATACAACCTCTAAAGGAGAGTTTGCTGTTATTGGAATATTGTATAAAATTGGTTCTCCAGATCCCTTTTTTTCAAAGCTGCTCAATGACATAAAATCAAGTGTGGACAAGGATATAGATGTAGGACTAATCAACTCAAGAGAGATCAAGTTTAAAAGCAGACCGTACTACAGATATGTTGGTTCTCTTACAACTCCAGCATGCACTGAAGGTGTTGTTTGGACAATTGTGAAGAAGGTCAGGACAGTCTCAAGCGAGCAATTAAGTGCCTTGAAAGGAGCTGTTCATCATGGATATGAGGAAAATGCAAGGCCAACGCAGGAACTTGGTGGAAGACAAGTTTGGTTATATGGACCTATGGAGAATGAAAAGCCTACTTAA
>Glyma19g31870.1 sequence type=predicted peptide gene model=Glyma19g31870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNGAKKMNGLKKDEEYTYAIGSSTGPENWWRINQKWKTCGDGKLQSPIDLLDQRVQELPQLGKLKKAYKSAPAVLKNRGHDIVLEWKGDAGQLNINETYYNLIQCHWHTPSEHTLNGTKFDLELHAVHTTSKGEFAVIGILYKIGSPDPFFSKLLNDIKSSVDKDIDVGLINSREIKFKSRPYYRYVGSLTTPACTEGVVWTIVKKVRTVSSEQLSALKGAVHHGYEENARPTQELGGRQVWLYGPMENEKPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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