SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10330 | AT | Annotation by Michelle Graham. TAIR10: Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006352 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1597 | KOG | Transcription initiation factor TFIIB | JGI | ISS | |
| PTHR11618 | Panther | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | JGI | ISS | |
| PTHR11618:SF13 | Panther | BRF GENE PRODUCT | JGI | ISS | |
| PF00382 | PFAM | Transcription factor TFIIB repeat | JGI | ISS | |
| PF08271 | PFAM | TFIIB zinc-binding | JGI | ISS | |
| UniRef100_E6NU95 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL06B08.6 protein n=1 Tax=Jatropha curcas RepID=E6NU95_9ROSI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8Y6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8Y6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g31830 not represented in the dataset |
Glyma19g31830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g29070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g136800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g31830.2 sequence type=transcript gene model=Glyma19g31830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCAAAACCATCGCCACCATGTCCGATAGGTTGGGACTCGTTGCAACCATCAAGGATCGGGCTAATGAGATATATAAACGAGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTAAAACAACTGGGATTGGAACAGGGCCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGAATGACTAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTCCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAAGAAGATGATTTGAAGAACCTGTGCAGTCCTTAAAGCAAAACAATAGCGACCACATTTAACAACTTAGATGCCATTGGAACGTTCTGTTCTGGATCTACTGAACTGTTTTATACTTTTAATTCAAAATGAAAATGCCTCTTCTATTAGTATTTTCTTCTTCTAACTGCACATTAATTTTGGTTAACCCTCCCAATTTGAGAATTCTAGGGGAGAGGCACCGCTGATATATAGAATTAGCTCAACCTTTATGATAGTAAGCTCATTTTGCACTTGCGTTGAAATTGCTGGGTCATATAGGGTAATAGTTATTTGTAGCATGAGAAATGCTAAATGCTCTAATTTTTTTTTTGAATATATCTTTTATTATTAGATGAAGTTTATTGGAAATCTCAATTTTGT
>Glyma19g31830.1 sequence type=CDS gene model=Glyma19g31830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGACGCGTTCTGCAGCGACTGCAAGAGACAGACCGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGTGTTCCGAGTGCGGCCTCGTCTTGGAGTCTCACTCCATTGATGAAACCTCCGAGTGGCGAACCTTCGCGAATGAGTCCGGCGACAACGACCCTGTCCGTGTCGGTGGGCCCACCAACCCGCTACTAACCGACGGCGGCCTCTCCACCGTCATCGCCAAGCCCAGTGGCGGCTCCAGCGAGTTCCTATCGTTGGGACTCGTTGCAACCATCAAGGATCGGGCTAATGAGATATATAAACGAGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTAAAACAACTGGGATTGGAACAGGGCCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGAATGACTAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTCCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAAGAAGATGATTTGAAGAACCTGTGCAGTCCTTAA >Glyma19g31830.2 sequence type=CDS gene model=Glyma19g31830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCGATAGGTTGGGACTCGTTGCAACCATCAAGGATCGGGCTAATGAGATATATAAACGAGTTGAAGATCAGAAGTCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAGGAAATTGGCCGAGCGAAAGAATACATAGTAAAACAACTGGGATTGGAACAGGGCCAATCTGTAGAGATGGGAACAATACATGCTGGGGACTTTATGAGACGTTTTTGTTCTAATCTCGGAATGACTAATCAAGCTGTTAAAGCTGCTCAGGAAGCTGTCCAGAAATCAGAAGAATTTGATATAAGGAGGAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATAACTCAGCTTTCTGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTTGCAGAAGGAACCATTAGGAACTCATACAAGGATCTTTATCCCCATGTTTCAAAAATAATACCAAGCTGGTATGCAAAAGAAGATGATTTGAAGAACCTGTGCAGTCCTTAA
>Glyma19g31830.1 sequence type=predicted peptide gene model=Glyma19g31830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLTDGGLSTVIAKPSGGSSEFLSLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEDDLKNLCSP* >Glyma19g31830.2 sequence type=predicted peptide gene model=Glyma19g31830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLEQGQSVEMGTIHAGDFMRRFCSNLGMTNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEDDLKNLCSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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