Glyma19g31820 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g31820

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39602584
stop:	39605253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G15490	AT	Annotation by Michelle Graham. TAIR10: UDP-glycosyltransferase 73B4 \| chr2:6761750-6763398 FORWARD LENGTH=484	SoyBase	E_val: 8.00E-56	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080043	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080044	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 7-O-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_Q8S3B8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zeatin O-glucosyltransferase n=1 Tax=Glycine max RepID=Q8S3B8_SOYBN	SoyBase	E_val: 9.00E-180	ISS
UniRef100_UPI0002339EBA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339EBA related cluster n=1 Tax=unknown RepID=UPI0002339EBA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31820

Paralog	Evidence	Comments
Glyma03g29051	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g136700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31820

Limit To All Plant Sequences

>Glyma19g31820.2   sequence type=CDS   gene model=Glyma19g31820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCAACTACAGAAGCCATAATAAGAAAAGCCACGACAATGACATGTTCCATCCAACCCAAGTGGTGGTGGTTGTGGCCTCCACGAGTCTCCGAGTCCCCGTGTATGCACTCTTGCAATCCCTTTCATCTGTAGCCAGAAGGGTCGTTGTCATCTATGACTCCCTCATGGCATCTGTGGTGCAAGATGCTATTCATGTGCCCAATTGTGAGAGTTACACTTTCCACAGTGTTTCTGCCTTCACTATGTTCCTGTACTTTTGGGATGCAATGGGGAGACCCCCAGTAGAAAAAGTGTCCCACGTCATCCCTGAAGTTCCTTCCCTTGAAGGGTGCTTCACAACCCGATGCATAGATTTCATCACTTCACAGTATGAGTTCCACAAGTTCAGCAAAGGGACTATATACAACACCACAAGGGTAATTGAGAGTCCTTACTTGGAGTTAATAAAGAGGATCATTAGTAGCAAGACTCATTGGGCCTTGGGGCCCTTCAACCCTTTGTCCATTGAGAAGGGAGTCTATAACACAAAGCACTTCAGTGTTGAGTGGCTTGACAAGCAAGAAGCAGGATCAGTTTTGTATGTGTCGTTTGGGACAACAACATGCTTCTCTGAGGAGCAAATCAAGGAGGTTGCAAATGGGTTGGAAAAAAGCAAGCAAAAGTTCATATGGGTGGTGAGGGATGCTGACAAGGGAGATGTGTTCATTGAGGATGGTGTGAGAACTTCTGAGCTTCCAAAGGGGTTTGAAGAGAGAGTGAAAGGCACGGGGTTGGTTGTGAGAGACTGGGCACCCCAATTGGAGATTCTAAGCCACAGTTCAACTGGTGGGTTTATGAGTCACTGTGGATGGAACTCTTGCATGGAGAGCATCACAATGGGGGTGCCAATAGCAGCATGGCCTATGCACTCTGACCAGCCGAGGAACAGGGTTTTGGTGACCGAAGTGCTCAAGATTGGGGTGGTTGTGAAGGACTGGGACCACAGGGATGAGTTGGTGACAGCATCAGATGTTGAGAATGCCGTGAGGAGATTGATAGCAACAAAAGAAGGTGATGAGATGAGACAAAGGGCAATGAACCTAAAAAATGCTATTCGCAGGTCCAGGGATGAAGGGGGTGTTTCTCGCGTGGAACTGGATGATTTCATTGCGCACATCACTAGATAG

Predicted protein sequences of Glyma19g31820

Limit To All Plant Sequences

>Glyma19g31820.2   sequence type=predicted peptide   gene model=Glyma19g31820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNYRSHNKKSHDNDMFHPTQVVVVVASTSLRVPVYALLQSLSSVARRVVVIYDSLMASVVQDAIHVPNCESYTFHSVSAFTMFLYFWDAMGRPPVEKVSHVIPEVPSLEGCFTTRCIDFITSQYEFHKFSKGTIYNTTRVIESPYLELIKRIISSKTHWALGPFNPLSIEKGVYNTKHFSVEWLDKQEAGSVLYVSFGTTTCFSEEQIKEVANGLEKSKQKFIWVVRDADKGDVFIEDGVRTSELPKGFEERVKGTGLVVRDWAPQLEILSHSSTGGFMSHCGWNSCMESITMGVPIAAWPMHSDQPRNRVLVTEVLKIGVVVKDWDHRDELVTASDVENAVRRLIATKEGDEMRQRAMNLKNAIRRSRDEGGVSRVELDDFIAHITR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain