Glyma19g31710 - SoyBase

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Report for Sequence Feature Glyma19g31710

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39511011
stop:	39515475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20990	AT	Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 4 \| chr4:11219772-11221126 FORWARD LENGTH=267	SoyBase	E_val: 8.00E-102	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0004089	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0382	KOG	Carbonic anhydrase	JGI		ISS
PTHR18952	Panther	CARBONIC ANHYDRASE	JGI		ISS
PTHR18952:SF2	Panther	gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v,	JGI		ISS
PF00194	PFAM	Eukaryotic-type carbonic anhydrase	JGI		ISS
UniRef100_G7KSM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 n=1 Tax=Medicago truncatula RepID=G7KSM1_MEDTR	SoyBase	E_val: 2.00E-122	ISS
UniRef100_I1N8X5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N8X5_SOYBN	SoyBase	E_val: 1.00E-178	ISS

Expression Patterns of Glyma19g31710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31710

Paralog	Evidence	Comments
Glyma03g28950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g135900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g31710

Limit To All Plant Sequences

>Glyma19g31710.3   sequence type=transcript   gene model=Glyma19g31710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCAAACATGTGGTGTTGGATATCTAACGTGTATCCAAACACGCACTCCATCCTATTGTTTCATGAACTTCTTATTTTTCGGCTGGAATGGAAAGGAGATGCAGGCCATCTTAACATAAATGAAACTTACTACAATCTGATTCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATAAATCCTCTAAGGGAGAGTTTGCTGTTATTGGAATATTGTATAAAATTGGTTCTCCAGATCCCTTTTTTTCAAAGCTGCTCAATGACATAAAATCAAGTGTGGACAAGGATATAGATGTAGGAGTAATCAACCCAAGAGAGATCAAGTTTAAAAGCAGACCGTACTACAGATATGTTGGTTCTCTTACAACTCCACCATGCACTGAAGGTGTTGTTTGGACAATTGTGAAGAAGGTCAGGACAGTCTCAAGCGAGCAATTAAGTGCCTTGAAAGGAGCTGTTCATCATGGATATGAGGAAAATGCAAGGCCAACGCAGGAACTTGGTGGAAGACAAGTTTGGTTATATGGACCTATGGAGAATGAAAAGCCTACTTAAATATTTGTATAAAGATGTGAAGGGAAGTAACTGCTTCTACACTTGGCAATAAAGTAGAGTACGAAGTATGGACAAATAAAGGCTACATGAGGGCACGATCAAGCACCTGGAATAATGATCTTTATTATGTTTTAAGTTGTGTTTTTGGTGTGCTTGTTTTTTAGTATGTTGGCTTGATTTGTTTGTGCTGGTATATATGAGAGAGTGATAATTTGTACTTTTGAGGAGGGAGATAGTGTGACAAAAACATGAAAAGGAGTTTTATTATTTAAATTTAAATGAAGTTTCTTGCAAGC

Coding sequences of Glyma19g31710

Limit To All Plant Sequences

>Glyma19g31710.2   sequence type=CDS   gene model=Glyma19g31710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTCCCCACCAATCTCAACTTCTTCTATGTGTTCCTCCCAATGCTCATTCTCTATTCCTCTTCCTTCCTTGCATCAGCTTCTGATTCTAAAGCTGAAGATGAAAAATTTACCTACGCTATAGGAAGTAGCACAGGACCAGAGAATTGGTGGCATGTCAACCAAAAATGGAAAACATGTGGGGATGGAAAACTACAATCTCCCATTGATCTGCTTGACCAAAGGGTTCAAGAGCTTCCTCAATTGGGTAAACTTAAGAAAGCTTACAAATCAGCTCCTGCTGTCCTAAAGAATAGTGGTCATGACATCGTGCTGGAATGGAAAGGAGATGCAGGCCATCTTAACATAAATGAAACTTACTACAATCTGATTCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATAAATCCTCTAAGGGAGAGTTTGCTGTTATTGGAATATTGTATAAAATTGGTTCTCCAGATCCCTTTTTTTCAAAGCTGCTCAATGACATAAAATCAAGTGTGGACAAGGATATAGATGTAGGAGTAATCAACCCAAGAGAGATCAAGTTTAAAAGCAGACCGTACTACAGATATGTTGGTTCTCTTACAACTCCACCATGCACTGAAGGTGTTGTTTGGACAATTGTGAAGAAGGTCAGGACAGTCTCAAGCGAGCAATTAAGTGCCTTGAAAGGAGCTGTTCATCATGGATATGAGGAAAATGCAAGGCCAACGCAGGAACTTGGTGGAAGACAAGTTTGGTTATATGGACCTATGGAGAATGAAAAGCCTACTTAA

>Glyma19g31710.3   sequence type=CDS   gene model=Glyma19g31710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTGTTGGATATCTAACGTGTATCCAAACACGCACTCCATCCTATTGTTTCATGAACTTCTTATTTTTCGGCTGGAATGGAAAGGAGATGCAGGCCATCTTAACATAAATGAAACTTACTACAATCTGATTCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATAAATCCTCTAAGGGAGAGTTTGCTGTTATTGGAATATTGTATAAAATTGGTTCTCCAGATCCCTTTTTTTCAAAGCTGCTCAATGACATAAAATCAAGTGTGGACAAGGATATAGATGTAGGAGTAATCAACCCAAGAGAGATCAAGTTTAAAAGCAGACCGTACTACAGATATGTTGGTTCTCTTACAACTCCACCATGCACTGAAGGTGTTGTTTGGACAATTGTGAAGAAGGTCAGGACAGTCTCAAGCGAGCAATTAAGTGCCTTGAAAGGAGCTGTTCATCATGGATATGAGGAAAATGCAAGGCCAACGCAGGAACTTGGTGGAAGACAAGTTTGGTTATATGGACCTATGGAGAATGAAAAGCCTACTTAA

Predicted protein sequences of Glyma19g31710

Limit To All Plant Sequences

>Glyma19g31710.2   sequence type=predicted peptide   gene model=Glyma19g31710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLPTNLNFFYVFLPMLILYSSSFLASASDSKAEDEKFTYAIGSSTGPENWWHVNQKWKTCGDGKLQSPIDLLDQRVQELPQLGKLKKAYKSAPAVLKNSGHDIVLEWKGDAGHLNINETYYNLIQCHWHTPSEHTLNGTKFDLELHAVHKSSKGEFAVIGILYKIGSPDPFFSKLLNDIKSSVDKDIDVGVINPREIKFKSRPYYRYVGSLTTPPCTEGVVWTIVKKVRTVSSEQLSALKGAVHHGYEENARPTQELGGRQVWLYGPMENEKPT*

>Glyma19g31710.3   sequence type=predicted peptide   gene model=Glyma19g31710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWCWISNVYPNTHSILLFHELLIFRLEWKGDAGHLNINETYYNLIQCHWHTPSEHTLNGTKFDLELHAVHKSSKGEFAVIGILYKIGSPDPFFSKLLNDIKSSVDKDIDVGVINPREIKFKSRPYYRYVGSLTTPPCTEGVVWTIVKKVRTVSSEQLSALKGAVHHGYEENARPTQELGGRQVWLYGPMENEKPT*

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