Glyma19g31600 - SoyBase

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Report for Sequence Feature Glyma19g31600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39387650
stop:	39393874
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10140	AT	Annotation by Michelle Graham. TAIR10: RECA homolog 3 \| chr3:3134984-3137069 FORWARD LENGTH=389	SoyBase	E_val: 1.00E-142	ISS
GO:0000002	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial genome maintenance	SoyBase	N/A	ISS
GO:0006259	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA metabolic process	SoyBase	N/A	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006310	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA recombination	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009432	GO-bp	Annotation by Michelle Graham. GO Biological Process: SOS response	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003697	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG1433	KOG	DNA repair protein RAD51/RHP55	JGI		ISS
PTHR22942	Panther	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	JGI		ISS
PTHR22942:SF1	Panther	DNA REPAIR PROTEIN RECA	JGI		ISS
PF00154	PFAM	recA bacterial DNA recombination protein	JGI		ISS
UniRef100_G7KSL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RecA n=1 Tax=Medicago truncatula RepID=G7KSL4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8W7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8W7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31600

Paralog	Evidence	Comments
Glyma03g28880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g134900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g31600

Limit To All Plant Sequences

>Glyma19g31600.2   sequence type=transcript   gene model=Glyma19g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTCTTGTTTTTTTTGGAGCGAGGGAACACCCTGTTCCCAGTTTTGTTAAGGTTGGCGCAGTCACTTACTAGACTCACTCGAGCGCCAAAAACCCTTGTCTTGTTTTCGTTTCCTTCTTATAAATAAACTATACTCTACTTAGGTAAGGTGGGATCGAAGAAAAGAACATCATGTGCATAAGCTAGCTTCGTGCTGTGTTTTGCTGTCTCAAATGTTTATGAAGTCGTAAATGCCGCCGCCACACGTCTCTGTTGTCTCATAAAAATGTCTCTTTTGCCTCGTCTTCATATCTTAGCTAGGCCTTTACTCTCCCCCTTCTGCCAGAATGGAGGTAGACAAATAATGAGCAGGATTGGCATGACTGCCTGCTCTCTTTCTTCTGCAGATTTTGAATGTGATGCGATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGCGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGATTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGATCTAGCTCTGGGAATTGGTGGACTACCAAAGGGCAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCAATTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCATAGATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGACAGTGTTGCTGCCCTCGTCCCCAAATGTGAACTTGATCAATTAGGAGTTACCACTAATCGCGATTTACAATCACGAATGATGACTCAAGCACTGCGGAAGATTCACTATTCATTATCTCATTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGCCAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAGTGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCTTTGTGAAACATGAGGGAAGCTACTTTATTGAAGGTAACAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATCATGCTGTTTGTGACAAGGTGGTTAAGGATATGAGAAGACTTTATTTTTAAAATCAGGTGGACCTTACATCTTCCTATAAACTTGCTCAGCATGGTTTCACTAGGCCAAATCTCTTTCAATGGTATATATGGCAAACTTTATGTAATTGAGCATTGCCAACATTTTTTATCATCAAGGCATTAATATTGTCTTCTATGGGTACCAAGTATCAACCATTCTTTAGATGAGCTTGTGGCATTTGAAGTTACAAGAATTTTCTGCTGCTTTAATGCGAGTCCCTTGGATCTAGGCATGGAATACTGCAAATCCACACTTCCAAATGAGAAATTTGATTGCTATTGCAAAACCATTTGACACCTTCCGGTGTGTTACTCTATTGGACATGAGTCATTAATTATGTAATGGATCAAACTGTAGTACATGAATCAAACTATCAAGGATACTGCTATGCACACCCAGCAAAATTGCTGGTACATTCAACAATTTTGCATTTTTCCCATTTTATCCTTTCGTAAAAGGATGCGGATCAGTTGAT

Coding sequences of Glyma19g31600

Limit To All Plant Sequences

>Glyma19g31600.1   sequence type=CDS   gene model=Glyma19g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTTTGCCTCGTCTTCATATCTTAGCTAGGCCTTTACTCTCCCCCTTCTGCCAGAATGGAGGTAGACAAATAATGAGCAGGATTGGCATGACTGCCTGCTCTCTTTCTTCTGCAGCTGAAGCTTCAGATTTTGAATGTGATGCGATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGCGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGATTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGATCTAGCTCTGGGAATTGGTGGACTACCAAAGGGCAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCAATTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCATAGATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGACAGTGTTGCTGCCCTCGTCCCCAAATGTGAACTTGATCAATTAGGAGTTACCACTAATCGCGATTTACAATCACGAATGATGACTCAAGCACTGCGGAAGATTCACTATTCATTATCTCATTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGCCAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAGTGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCTTTGTGAAACATGAGGGAAGCTACTTTATTGAAGGTAACAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATCATGCTGTTTGTGACAAGGTGGTTAAGGATATGAGAAGACTTTATTTTTAA

>Glyma19g31600.2   sequence type=CDS   gene model=Glyma19g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTTTGCCTCGTCTTCATATCTTAGCTAGGCCTTTACTCTCCCCCTTCTGCCAGAATGGAGGTAGACAAATAATGAGCAGGATTGGCATGACTGCCTGCTCTCTTTCTTCTGCAGATTTTGAATGTGATGCGATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGCTTGGCTGTCTCGCAGCTTGCTAGCGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGATTTTTGGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGATCTAGCTCTGGGAATTGGTGGACTACCAAAGGGCAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACTACACTTGCAATTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCATAGATACTGAAAACCTTCTTATATCACATCCTGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGACAGTGTTGCTGCCCTCGTCCCCAAATGTGAACTTGATCAATTAGGAGTTACCACTAATCGCGATTTACAATCACGAATGATGACTCAAGCACTGCGGAAGATTCACTATTCATTATCTCATTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGCCAAGGAATATGGATCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAGTGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCTTTGTGAAACATGAGGGAAGCTACTTTATTGAAGGTAACAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATCATGCTGTTTGTGACAAGGTGGTTAAGGATATGAGAAGACTTTATTTTTAA

Predicted protein sequences of Glyma19g31600

Limit To All Plant Sequences

>Glyma19g31600.1   sequence type=predicted peptide   gene model=Glyma19g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLPRLHILARPLLSPFCQNGGRQIMSRIGMTACSLSSAAEASDFECDAIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENALDFSLMESMGIDTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVTTNRDLQSRMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALRFYAAVRLRLSRVRLIKTEDKVEGVMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIFVKHEGSYFIEGNSFDSREAAELFLAQNHAVCDKVVKDMRRLYF*

>Glyma19g31600.2   sequence type=predicted peptide   gene model=Glyma19g31600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLLPRLHILARPLLSPFCQNGGRQIMSRIGMTACSLSSADFECDAIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLQKIFGVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLAIQIIKEAQKLGGYCAYLDVENALDFSLMESMGIDTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPKCELDQLGVTTNRDLQSRMMTQALRKIHYSLSHSQTLIVFINQIRLSPKSAKEYGSVEEVTCGGNALRFYAAVRLRLSRVRLIKTEDKVEGVMICAQVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIFVKHEGSYFIEGNSFDSREAAELFLAQNHAVCDKVVKDMRRLYF*

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