Glyma19g31590 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g31590

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39380529
stop:	39383551
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57270	AT	Annotation by Michelle Graham. TAIR10: beta-1,3-glucanase 1 \| chr3:21191336-21193118 REVERSE LENGTH=340	SoyBase	E_val: 1.00E-140	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
UniRef100_I1N8W6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8W6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39900	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-glucanase n=1 Tax=Glycine max RepID=Q39900_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31590

Paralog	Evidence	Comments
Glyma03g28870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g134800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g31590

Limit To All Plant Sequences

>Glyma19g31590.2   sequence type=transcript   gene model=Glyma19g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTTCCTTAACCTATCTTGTTCTTAATTATCAATGTCTCAATCCCATTCAACTGGAAAATGTTCTTCCATGACTTCAATACTCCTCTTGTTTATGCTTCTAATCACTAACACAGGCACAACAGCATTAGTGCCATATTGTTCCAGCATATCTGGTGCAGGTGCACAATCTGGTGTATGCTATGGAAGAGTTGGCAACAATTTACCGTCCCCACAAGAAGTAGTGGCCCTTTACAAACAATATGATTTCCGAAGGATGAGAATCTATGATCCAAGCCAACAAGTACTCCAAGCTCTGAGAGTTTCCAACATTGAGTTGCTGCTAGATCTCCCTAACGTCAACCTCCAAAGTGTAGCTTCTAGCCAAGACAACGCAAACAGATGGGTGCAAGACAACGTCAGAAACTATGCCAACAATGTCAGATTCAGGTACATTTCGGTGGGAAATGAAGTAAAACCTTGGGACTCATTTGCACGTTTTGTAGTGCCTGCAATCCAAAACATCCAAAGAGCCGTTTCTGCGGCTGGCCTTGGAAACCAAATAAAAGTTTCCACTGCCATTGAAACTGGTGCCTTGGCAGAATCATACCCTCCATCAAGGGGCTCTTTTAGGTCTGACTATTTAACATCATATCTTGATGGTGTCATTAGACATCTAGTGAACAATAATGCCCCATTATTGGTTAATGTGTACCCTTATTTCGCTTACATTGGAAACCCTAGGGACATTAGTCTTGACTATGCACTTTTTAGGTCTCCTTCAGTGGTAGTGCAAGATGGTTCACTTGGTTACCGTAACCTTTTTAATGCTATGGTGGATGCTGTTTATGCTGCATTGGAGAAAGCAGGAGGAGGGTCACTGAACATAGTTGTGTCTGAGAGTGGATGGCCTTCTTCTGGTGGAACAGCCACTTCACTTGATAATGCAAGAACTTACAACACAAACTTGGTTCGGAATGTGAAACAAGGGACCCCAAAGAGGCCTAATAGACCCCTTGAAACTTATGTGTTTGCCATGTTTGATGAAAATCAGAAGCAACCAGAGTATGAGAAGTTTTGGGGGCTCTTCCTTCCAAATAAACAGCCTAAATACTCAATTAATTTGAATTAGTTACTAGAAGCATAGTGTATAAGAAATAAGGGCTATGATTCCAAATTAAACTTCCATAATTGTTCTAGAAGAGGCAGGCAGGTATGGTCCGTATGGAGCTTTATCTGCACTATTGATTATTGGAGTCTTTTATGTACCCATTTACGAGCAAAGTTTGTTTTAAATAATAATTCTATTATCAA

Coding sequences of Glyma19g31590

Limit To All Plant Sequences

>Glyma19g31590.1   sequence type=CDS   gene model=Glyma19g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAATCCCATTCAACTGGAAAATGTTCTTCCATGACTTCAATACTCCTCTTGTTTATGCTTCTAATCACTAACACAGGCACAACAGGTGCACAATCTGGTGTATGCTATGGAAGAGTTGGCAACAATTTACCGTCCCCACAAGAAGTAGTGGCCCTTTACAAACAATATGATTTCCGAAGGATGAGAATCTATGATCCAAGCCAACAAGTACTCCAAGCTCTGAGAGTTTCCAACATTGAGTTGCTGCTAGATCTCCCTAACGTCAACCTCCAAAGTGTAGCTTCTAGCCAAGACAACGCAAACAGATGGGTGCAAGACAACGTCAGAAACTATGCCAACAATGTCAGATTCAGGTACATTTCGGTGGGAAATGAAGTAAAACCTTGGGACTCATTTGCACGTTTTGTAGTGCCTGCAATCCAAAACATCCAAAGAGCCGTTTCTGCGGCTGGCCTTGGAAACCAAATAAAAGTTTCCACTGCCATTGAAACTGGTGCCTTGGCAGAATCATACCCTCCATCAAGGGGCTCTTTTAGGTCTGACTATTTAACATCATATCTTGATGGTGTCATTAGACATCTAGTGAACAATAATGCCCCATTATTGGTTAATGTGTACCCTTATTTCGCTTACATTGGAAACCCTAGGGACATTAGTCTTGACTATGCACTTTTTAGGTCTCCTTCAGTGGTAGTGCAAGATGGTTCACTTGGTTACCGTAACCTTTTTAATGCTATGGTGGATGCTGTTTATGCTGCATTGGAGAAAGCAGGAGGAGGGTCACTGAACATAGTTGTGTCTGAGAGTGGATGGCCTTCTTCTGGTGGAACAGCCACTTCACTTGATAATGCAAGAACTTACAACACAAACTTGGTTCGGAATGTGAAACAAGGGACCCCAAAGAGGCCTAATAGACCCCTTGAAACTTATGTGTTTGCCATGTTTGATGAAAATCAGAAGCAACCAGAGTATGAGAAGTTTTGGGGGCTCTTCCTTCCAAATAAACAGCCTAAATACTCAATTAATTTGAATTAG

>Glyma19g31590.2   sequence type=CDS   gene model=Glyma19g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCAATCCCATTCAACTGGAAAATGTTCTTCCATGACTTCAATACTCCTCTTGTTTATGCTTCTAATCACTAACACAGGCACAACAGCATTAGTGCCATATTGTTCCAGCATATCTGGTGCAGGTGCACAATCTGGTGTATGCTATGGAAGAGTTGGCAACAATTTACCGTCCCCACAAGAAGTAGTGGCCCTTTACAAACAATATGATTTCCGAAGGATGAGAATCTATGATCCAAGCCAACAAGTACTCCAAGCTCTGAGAGTTTCCAACATTGAGTTGCTGCTAGATCTCCCTAACGTCAACCTCCAAAGTGTAGCTTCTAGCCAAGACAACGCAAACAGATGGGTGCAAGACAACGTCAGAAACTATGCCAACAATGTCAGATTCAGGTACATTTCGGTGGGAAATGAAGTAAAACCTTGGGACTCATTTGCACGTTTTGTAGTGCCTGCAATCCAAAACATCCAAAGAGCCGTTTCTGCGGCTGGCCTTGGAAACCAAATAAAAGTTTCCACTGCCATTGAAACTGGTGCCTTGGCAGAATCATACCCTCCATCAAGGGGCTCTTTTAGGTCTGACTATTTAACATCATATCTTGATGGTGTCATTAGACATCTAGTGAACAATAATGCCCCATTATTGGTTAATGTGTACCCTTATTTCGCTTACATTGGAAACCCTAGGGACATTAGTCTTGACTATGCACTTTTTAGGTCTCCTTCAGTGGTAGTGCAAGATGGTTCACTTGGTTACCGTAACCTTTTTAATGCTATGGTGGATGCTGTTTATGCTGCATTGGAGAAAGCAGGAGGAGGGTCACTGAACATAGTTGTGTCTGAGAGTGGATGGCCTTCTTCTGGTGGAACAGCCACTTCACTTGATAATGCAAGAACTTACAACACAAACTTGGTTCGGAATGTGAAACAAGGGACCCCAAAGAGGCCTAATAGACCCCTTGAAACTTATGTGTTTGCCATGTTTGATGAAAATCAGAAGCAACCAGAGTATGAGAAGTTTTGGGGGCTCTTCCTTCCAAATAAACAGCCTAAATACTCAATTAATTTGAATTAG

Predicted protein sequences of Glyma19g31590

Limit To All Plant Sequences

>Glyma19g31590.1   sequence type=predicted peptide   gene model=Glyma19g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQSHSTGKCSSMTSILLLFMLLITNTGTTGAQSGVCYGRVGNNLPSPQEVVALYKQYDFRRMRIYDPSQQVLQALRVSNIELLLDLPNVNLQSVASSQDNANRWVQDNVRNYANNVRFRYISVGNEVKPWDSFARFVVPAIQNIQRAVSAAGLGNQIKVSTAIETGALAESYPPSRGSFRSDYLTSYLDGVIRHLVNNNAPLLVNVYPYFAYIGNPRDISLDYALFRSPSVVVQDGSLGYRNLFNAMVDAVYAALEKAGGGSLNIVVSESGWPSSGGTATSLDNARTYNTNLVRNVKQGTPKRPNRPLETYVFAMFDENQKQPEYEKFWGLFLPNKQPKYSINLN*

>Glyma19g31590.2   sequence type=predicted peptide   gene model=Glyma19g31590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQSHSTGKCSSMTSILLLFMLLITNTGTTALVPYCSSISGAGAQSGVCYGRVGNNLPSPQEVVALYKQYDFRRMRIYDPSQQVLQALRVSNIELLLDLPNVNLQSVASSQDNANRWVQDNVRNYANNVRFRYISVGNEVKPWDSFARFVVPAIQNIQRAVSAAGLGNQIKVSTAIETGALAESYPPSRGSFRSDYLTSYLDGVIRHLVNNNAPLLVNVYPYFAYIGNPRDISLDYALFRSPSVVVQDGSLGYRNLFNAMVDAVYAALEKAGGGSLNIVVSESGWPSSGGTATSLDNARTYNTNLVRNVKQGTPKRPNRPLETYVFAMFDENQKQPEYEKFWGLFLPNKQPKYSINLN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain