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Report for Sequence Feature Glyma19g31511

Feature Type:gene_model
Chromosome:Gm19
Start:39291939
stop:39293080
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g31511
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57180AT Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21163663-21166006 REVERSE LENGTH=660 SoyBaseE_val: 2.00E-131ISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0032502GO-bp Annotation by Michelle Graham. GO Biological Process: developmental process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
PTHR11089Panther GTP-BINDING PROTEIN-RELATED JGI ISS
PTHR11089:SF3Panther GTP-BINDING PROTEIN-RELATED JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
UniRef100_I1JN91UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN91_SOYBN SoyBaseE_val: 3.00E-167ISS
UniRef100_Q8W4I6UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein n=1 Tax=Arabidopsis thaliana RepID=Q8W4I6_ARATH SoyBaseE_val: 1.00E-128ISS

Expression Patterns of Glyma19g31511
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31511 not represented in the dataset
Glyma19g31511 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31511
ParalogEvidenceComments
Glyma03g28770 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31511 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g133900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g31511
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g31511
>Glyma19g31511.1   sequence type=CDS   gene model=Glyma19g31511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTTCTGGAAGTGGCAGTGCTACTGTTGTTGTCATGGTCGTGGATTGTATTGATTGCGATGGTTCGTTCCCTAGAACTGCGGTGAAGTCATTGTTTCAAGCGTTGGAAAGAATTCAGGATAACTCGAAGCGGGCCAAGAAGCTACCGAAGATTGTTCTTGTGGCAACAAAGATTGATCTCCTTCCGTCGCAGGTTTCTCCTGCGAGGTTGGATAGATGGGTTAGAAACCGTGCAAGATCTGGAGGAGCACCTAAGTTAAACGGGGTTTATATGGTCAGTTCAAAGAAGGATTTAGGTGTGAGGAATTTGTTGTCGTTCGTGAAGGATTTGGCTGGTCCTCGTGGGAATGTGTGGGTGATTGGGGCTCAAAATGCAGGGAAGTCTACTCTGATCAATGCATTGGCAAAGAAACAAGGAGCTAAAGTTACAAAGCTCACGGAAGCTCCAATTCCTGGGACAACACTTGGGATCTTGAGAATTGCAGGAGTTTTGCCGGCTAAGACTAAGATGTTTGACACTCCAGGGCTTTTGCACCCATATTTAATGTCAATGAGATTGAACCGGGATGAACAAAAGATGGTTGAGATCAGGAAGGAACTTCGGCCTCGGACATACAGAATTAAGGTAGGGCAGGCTATACAAATTGGTGGCTTGACAAGACTTGACCTTGTTGAAGCCTCTGTTGAAACAATATATGTCATAGTTTGGGCATCAGCAAATGTTTCTCTTCACATGGGGAAAATAGAAAATGCTGATGAGGTTTCGAGAAATCATGTTGGTATCAGACTGCAGGTAAGCCTTTCCTTGTTCTCCTAG
Predicted protein sequences of Glyma19g31511
>Glyma19g31511.1   sequence type=predicted peptide   gene model=Glyma19g31511   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPSGSGSATVVVMVVDCIDCDGSFPRTAVKSLFQALERIQDNSKRAKKLPKIVLVATKIDLLPSQVSPARLDRWVRNRARSGGAPKLNGVYMVSSKKDLGVRNLLSFVKDLAGPRGNVWVIGAQNAGKSTLINALAKKQGAKVTKLTEAPIPGTTLGILRIAGVLPAKTKMFDTPGLLHPYLMSMRLNRDEQKMVEIRKELRPRTYRIKVGQAIQIGGLTRLDLVEASVETIYVIVWASANVSLHMGKIENADEVSRNHVGIRLQVSLSLFS*






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