SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g31491

Feature Type:gene_model
Chromosome:Gm19
Start:39276678
stop:39280424
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g31491
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57170AT Annotation by Michelle Graham. TAIR10: N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560 SoyBaseE_val: 4.00E-30ISS
GO:0006506GO-bp Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0017176GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity SoyBaseN/AISS
PTHR21329Panther N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT GPI1-RELATED JGI ISS
PTHR21329:SF3Panther PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERA JGI ISS
PF05024PFAM N-acetylglucosaminyl transferase component (Gpi1) JGI ISS
UniRef100_I1N375UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N375_SOYBN SoyBaseE_val: 6.00E-145ISS
UniRef100_Q2HRH2UniRef Annotation by Michelle Graham. Most informative UniRef hit: N-acetylglucosaminyl transferase component n=1 Tax=Medicago truncatula RepID=Q2HRH2_MEDTR SoyBaseE_val: 3.00E-106ISS

Expression Patterns of Glyma19g31491
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31491 not represented in the dataset
Glyma19g31491 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31491
ParalogEvidenceComments
Glyma03g28750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31491 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g133700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g31491
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g31491
>Glyma19g31491.1   sequence type=CDS   gene model=Glyma19g31491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGACACTGTAGGCTTTGGTGGCCAAAGCAACTTTTATCAAATAAAGAATCATCATCCAGTATTTTGTTGGGGTGGTTTGTCACCTGCTCACCATCATCCCTTGACATTATTGCAGCCTTTACTTGCAGTGAAGTCTTGCTTTCTAGTTATAGTCCTGGCATTCAGGGAATCATTTATGGCACATGGGGGAGCATGCCTTCAGTTCTTGAGGATAAGTCCAAGTTCTCTGTGCTTGGTCTGTGTGTCACTGACCCTACTACTAGTAATGGTTTGATGAATGGGAAAGAAGATGACAAAAAGAAGTTCTCTGAGTATGGCAATGCTTTGCAAGAGGGAGGTACAGATAGAAAGAATAACTCTAGGAGTTGTCGTTGCTTCCAGTTAGATGGTTCATTGAGGAAAAGTAGCCAATATGTTCTTGGAAGAAGTAATTGGGTTCTGGTCATGTTTGATTCTCCTGAACAGAATGATGTAGGAATACACAGGCTTCCAAAATTGCATCACATTCATTGGAATGGACTAACTATGTCACAATATGATGTTCCGGTTATAATTTATGAAACACCCTCTTATGGTGCTCATCATTTTTTATTATGTCATCTGGGTTCAAATGAGCAAGCTAAAACTTCCATTAAAAATCCTAAATGGGATACAATTATTCTGGCCATTAATTGCACAGCTGCTGCTAAAAGAATTTTTGAGACACACCTGTGGTTGGATAGCTTTGACTATACTGTGAAGCAACAAATTGTTGGATCTCTTTTATTTACACCACTTCTACTTCTTTTACCAACTACTTCCTTTTTCTATATATTCTTTAGTATCGTGGACACAACCATTAACCTTGTCTGTCCACTGATTGAAGTCACTACTATTTCGGTAATTCATGTTACCCCTTATACCAAGATATTTCTTTGGTTGGTAAGACCAGGAAGATTCCCTTCTGGAATATGGCTTGAAATTATTGGTTGTCAGAGTAATAGTACTGCTTCTCCAAGTGCTGATTTTACTGATGAAATAACCTCATACAAGGAGTCATTACATCTAAAGGATTTTAATAGAGAAAAATCTAGTAGTCTAGTTTCAGCTCTCCACAGCAACTACTTGAGCATAGGGTCATCCATCTCCACAGTGGCTCATGGAATACTCATTGGACAAAGAATGTCATCTATGCGCAGCATCCTTCTACCTTCACCAATGCCATGGACGTCCATGCACTACAAAGAGAGTATTGGCGCCTTTGTCATGATTCACTTATTGAATGCTTTATAA
Predicted protein sequences of Glyma19g31491
>Glyma19g31491.1   sequence type=predicted peptide   gene model=Glyma19g31491   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRHCRLWWPKQLLSNKESSSSILLGWFVTCSPSSLDIIAAFTCSEVLLSSYSPGIQGIIYGTWGSMPSVLEDKSKFSVLGLCVTDPTTSNGLMNGKEDDKKKFSEYGNALQEGGTDRKNNSRSCRCFQLDGSLRKSSQYVLGRSNWVLVMFDSPEQNDVGIHRLPKLHHIHWNGLTMSQYDVPVIIYETPSYGAHHFLLCHLGSNEQAKTSIKNPKWDTIILAINCTAAAKRIFETHLWLDSFDYTVKQQIVGSLLFTPLLLLLPTTSFFYIFFSIVDTTINLVCPLIEVTTISVIHVTPYTKIFLWLVRPGRFPSGIWLEIIGCQSNSTASPSADFTDEITSYKESLHLKDFNREKSSSLVSALHSNYLSIGSSISTVAHGILIGQRMSSMRSILLPSPMPWTSMHYKESIGAFVMIHLLNAL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo