Glyma19g31421 - SoyBase

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Report for Sequence Feature Glyma19g31421

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39228527
stop:	39233248
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31421

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04020	AT	Annotation by Michelle Graham. TAIR10: calmodulin binding \| chr5:1081980-1086546 REVERSE LENGTH=1495	SoyBase	E_val: 8.00E-28	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_G7KRQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pathogen-induced calmodulin-binding protein n=1 Tax=Medicago truncatula RepID=G7KRQ7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233ECE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ECE5 related cluster n=1 Tax=unknown RepID=UPI000233ECE5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31421

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31421 not represented in the dataset	Glyma19g31421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31421

Paralog	Evidence	Comments
Glyma03g28675	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31421 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g133000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31421

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31421

Limit To All Plant Sequences

>Glyma19g31421.1   sequence type=CDS   gene model=Glyma19g31421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGTTGAAATTGAAGGCAGCCACAGTGATTATGCTGAATCTGTTTCCAGCCAACCAGAAAATAGAGGAAGATTGGAATCCAAGAAGAAACTGAAGAAAGTGAGGTCAATAAGGCTTGTAAGATTGCCAAGCAAGAGATCATCCACCAGAGGAGGGAGACCCCAATATGACCCTCTTTCCATTGATACAAAAAGTTTAGAGGGGCCAACACCAATTGAAATGGCAGATGCATCACCTAATTACATGAAGGCTACCAGCAGTTCTCATGCAAAGGATAGTTTTCAGAATACAGAAAGAATACTATTCACAAAGAAGACTTTGACAAGAATGTCTACTGCTTTGAAACTGAAGAGAAGTCTGACTAGAAAGATATCTGGAAGGACTGAACCAAAGAGGAAACTGAAGTCCTCAAGATCAGTCAGGTTTGCAGCTGTCAAGGGCCAAAAATCAACCAGAAAGTTTTATGAATCTAGTTATGGAAGTGATGACCAGAATTGGAGAAGTGCAAGTGATGCTGCTAACAAACCCCAGAGAGTCATGACCAGAAGATTAAGCTTGAAGCCTGTGAGGATCTTAACAAAGATGCCTACTTTCAAATCAAATAATTCTTCCATGGAGAGTGGCCATCAGATGTCTCAATCCCCAGACACAAGCTTGCATAGAGCCACTTGTTCTTCTGCTCTCAAGGATTCCCATTTTCCTGATCACATTGATCTCCCTCAAGAGGGAAGTGACTCTCAAGGAGTATCAGCTGTGAAGGTTTGTCCATATTCTTACTGCTCACTTCACGGTCACTGCCACGCCAATCTGCCTCCACTGAAGCGCTTTGTGTCAATGAGGAGGCGTGCGTTGAAGAGCCAAAAGCCAACAAAAATGGATCGTCAACCTGTTACTAGATCAAAGCAGATTGGTAATGCAAAGAAGGCCGCTCCGAAAACTCAAACTATCCATGGTGAAGATGGCAGATCTCATTTTGAGAACAAGAAAAAGATGGCAAGGGGCTTATGGATTAGGCCACATGGCACTCCAGCATCCACAGTTTCTGAAGGTGTGGAATCAACATCAACAGATGGAGTCGAGTTTTCTGCTCCTGATACTGAGATATTGGATGGAGAAGTAACCAACACTGGAATCACAAGCAAAAATATGGAGCCGGATTATGAAGTACTGACGATGAGTTCTGTACAGAAAGAGCCTACTGATATGGCATGTGGAATGAAGGAAAGAGATAAAAAATATGCCAAAATGTGGCAGTTGATGTATAAGCATGCTGTATTGAGTACCACAGGTGAAAATAAGCAGCAATTTGATGGGAAGGACAAGGAAGGAAGAGATCAAGATTCCCTTGCAACTAATGAAGTGAACAAATCTTGTAGCGATGGTTGCGATACAGACCAGGACATGGATGATGAAAATAAGGATGCAATTGAGCTGGTGCAGAAAGCATTTGATGAAATCCTTCTTCCAGAACCTGAAGACTTCTTTTCTGATGATCAATTCAAATCTGAAGGCATTGATTCAGATGAGGCACACTTACAAAAGAGTGAAGCTGAGAGAGAAAGGAATACCTCAACATCCACACAATCTCCAAGAGCACAGAGGATGGGGACCAAACCTGACCAAAGAGGTCCAAAAAGCTGGAGCAATCTGAAGAAGTTAATCCTCTTGAAAAGGTTTGTGAAAGCATTAGAGAAGGTAAGAAACATCAACCCCCAAAGACCAAGACATTTTCCTTCCGATGCTAACTTAGAAATGGAAAAAGTTTTTCTCAAGCACCAAACAGCAGAAGAGAAGAAGAATGCTGAGGAATGGATGCTTGACTATGCACTTCAAAAGGTTGTTTCTAAACTTGCACCTGCTCAAAGACAAAAGGTGGCACTTCTAGTAAAAGCTTTTGAAACAATTCTTCCATTTCAAGATGCTGAAAATAGTCCACGGTTTTCTGCAACGATGGAACCTCAAGCAAATCCAGTTCAACCCCTTGATGATTCCTCAAATCATAGAGAGGAAGAAACATCATTTTTTCATGATAGTAGTATGGAAATGGAAGATAATGATAGTGATGATCCAATTCCAGAACTGCACAATCCTACTATGCTCAAAGAAAGATGTCTTGACTATCCTGGAACTGAGACAGTCAAGAACAAGCCAGCATTTGGAGCTACTGAAGAAGACTTGACTGGAAAGCAAAGTTTAGCTGGCAGTTATGGTAATGGGGAGAAGATATCAAGTGACACTGATAATATTTATCTAGGGGAGATCAAAGATACCACATCAAGTTCCTTAAATGAGCCAGTTGAAATTATAAGAAGCAGTCACGAGGAGGCTCCAACCGATGAAATAGTCAATGATGTTCCAGAAGATTTGCTATCCAGTGTGAATACAGAAAATCCAGATATGAAATCTGAGTCACCTGGAAGAGACGTTGAAACCAAGAGTCTGAAGGGTGACAATGGGCGACAATTTTCCATGTCCAAAAGTTTAGTCCTAGAAGGTCTAGTTAGATCACTCAGATCTAATTTGATCGGTTCAGGAGCACCAGCAAATGAAGCAGCTGCTGAAAGAAAAGAAGAAATTGAAAATGTTAATATGGGAATTGAGACTCTTGAAGAGTTCCCTACAAAGGAACAATCTGAAGCTCCTACAAGTGCGGTTGTAGAACCTGAGACCCCTGTAGAGAAACAAAGCAACACAGGATTGTGGTACTTGGTGTATAAGCACATGGTATCAAATGTGGCGGAAAACAACTCTGAGTCACTAATTGATGGGGCAGACGAGAAAGAGTCAGGGTTGGATGACATCAGAACAGGAGTAACTTCTAATGCTTATGGAAATACACCTATGAAGGATCAAGAGATGCAATTCAAGGATCACGTTGTAGTTGATCCAGAAGTTGCACGCCAACAGATTGAAGCCATCAAGATGGTAGAAGAAGCAATTGATTCAATTCTTCCAGATGATCAGGATGACTTAGCAGACAAGGAATCACTCACAGACAGCACAATTTCTGACAACGCCAAACAATCCGACAGAACTGAGAGAATGCACAGTGAAGACCTGAACCAAAAAGAAGAAAAGATGGAATCCGGGAATGGAATGATCCAAAAACAAGAAGAAGAATCAGCACCAAAGGAGCAAAACAAAACAAACCAGAAAATGTCTAGAAGCTGGAGCAATCTTAAAAAAGTGATCCTGCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGGAAATTCAACCCAAGAGGGACCAGATATCTACCTCTAGAACCTGATTCAGAAGCTGAAAAAGTTAACTTAAGGCATCAAGACATGGAAGAAAGAAAAGGCACCGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCTGCTAGGAAAAGAAAAGTGGAGCTGCTAGTGGAAGCTTTTGAAACAGTCATGCCAACCATAAAAAATTGA

Predicted protein sequences of Glyma19g31421

Limit To All Plant Sequences

>Glyma19g31421.1   sequence type=predicted peptide   gene model=Glyma19g31421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVEIEGSHSDYAESVSSQPENRGRLESKKKLKKVRSIRLVRLPSKRSSTRGGRPQYDPLSIDTKSLEGPTPIEMADASPNYMKATSSSHAKDSFQNTERILFTKKTLTRMSTALKLKRSLTRKISGRTEPKRKLKSSRSVRFAAVKGQKSTRKFYESSYGSDDQNWRSASDAANKPQRVMTRRLSLKPVRILTKMPTFKSNNSSMESGHQMSQSPDTSLHRATCSSALKDSHFPDHIDLPQEGSDSQGVSAVKVCPYSYCSLHGHCHANLPPLKRFVSMRRRALKSQKPTKMDRQPVTRSKQIGNAKKAAPKTQTIHGEDGRSHFENKKKMARGLWIRPHGTPASTVSEGVESTSTDGVEFSAPDTEILDGEVTNTGITSKNMEPDYEVLTMSSVQKEPTDMACGMKERDKKYAKMWQLMYKHAVLSTTGENKQQFDGKDKEGRDQDSLATNEVNKSCSDGCDTDQDMDDENKDAIELVQKAFDEILLPEPEDFFSDDQFKSEGIDSDEAHLQKSEAERERNTSTSTQSPRAQRMGTKPDQRGPKSWSNLKKLILLKRFVKALEKVRNINPQRPRHFPSDANLEMEKVFLKHQTAEEKKNAEEWMLDYALQKVVSKLAPAQRQKVALLVKAFETILPFQDAENSPRFSATMEPQANPVQPLDDSSNHREEETSFFHDSSMEMEDNDSDDPIPELHNPTMLKERCLDYPGTETVKNKPAFGATEEDLTGKQSLAGSYGNGEKISSDTDNIYLGEIKDTTSSSLNEPVEIIRSSHEEAPTDEIVNDVPEDLLSSVNTENPDMKSESPGRDVETKSLKGDNGRQFSMSKSLVLEGLVRSLRSNLIGSGAPANEAAAERKEEIENVNMGIETLEEFPTKEQSEAPTSAVVEPETPVEKQSNTGLWYLVYKHMVSNVAENNSESLIDGADEKESGLDDIRTGVTSNAYGNTPMKDQEMQFKDHVVVDPEVARQQIEAIKMVEEAIDSILPDDQDDLADKESLTDSTISDNAKQSDRTERMHSEDLNQKEEKMESGNGMIQKQEEESAPKEQNKTNQKMSRSWSNLKKVILLRRFIKSLEKVRKFNPRGTRYLPLEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVMPTIKN*

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