SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10190 | AT | Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209 | SoyBase | E_val: 5.00E-57 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| KOG0027 | KOG | Calmodulin and related proteins (EF-Hand superfamily) | JGI | ISS | |
| PTHR10891 | Panther | CALMODULIN | JGI | ISS | |
| PTHR10891:SF149 | Panther | CALMODULIN-RELATED | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| UniRef100_B9T832 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding allergen Ole e, putative n=1 Tax=Ricinus communis RepID=B9T832_RICCO | SoyBase | E_val: 4.00E-62 | ISS |
| UniRef100_UPI000233E75E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E75E related cluster n=1 Tax=unknown RepID=UPI000233E75E | SoyBase | E_val: 8.00E-156 | ISS |
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Glyma19g31395 not represented in the dataset |
Glyma19g31395 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g28650 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g132800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g31395.1 sequence type=CDS gene model=Glyma19g31395 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCTCATTAGCAGCATTAACCCCAAAAATCTCAAACTCAGTCCCAAACGCTTCTTTCGCAAAAAGGAACGATCTTTAGTCTCACGCTCCGACCCACCTTCATTCGGATCCGGATCTTCCTCCGACGACTCCACCACAAATCACAAGCCTTCCGCCGGTAACCAAACTCCGACCAGCGTCCTCCCGGGCGTCTCCGGAGACTGGTCCGACGTCGCCGCCGTCGACGTGCGGTGGGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGCGTCGTCACGCGCCAGGACCTCGAGGCCCTCCTCACGTGCCTCGGCGCGTCGCCGTGCCCCGACGACGTGGCGGTCATGCTCGGCGAGGTCGACGGCGACGGCATCACCGTAGAAAGGCTCATGAGCTACGTCGGGTCGGGTCTGAAACCCGGGTCGGATCCGGACGAGCTCAAGGAGGCGTTCGAGGTGTTCGACACGGATCGCGACGGGAGGATCTCGGCGGAGGAGCTGCTTAGGGTTTTCAAGGCCATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGTGTGGACAGAAATGGGGACGGGTTCGTCTGCTTCGAGGACTTTTCTCGTATGATGGAGCTGCAGCAGCAGCGATGA
>Glyma19g31395.1 sequence type=predicted peptide gene model=Glyma19g31395 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLISSINPKNLKLSPKRFFRKKERSLVSRSDPPSFGSGSSSDDSTTNHKPSAGNQTPTSVLPGVSGDWSDVAAVDVRWDLAQAFRLIDRDNDGVVTRQDLEALLTCLGASPCPDDVAVMLGEVDGDGITVERLMSYVGSGLKPGSDPDELKEAFEVFDTDRDGRISAEELLRVFKAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMELQQQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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