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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57030 | AT | Annotation by Michelle Graham. TAIR10: Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374 | SoyBase | E_val: 4.00E-168 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009821 | GO-bp | Annotation by Michelle Graham. GO Biological Process: alkaloid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016844 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: strictosidine synthase activity | SoyBase | N/A | ISS |
| KOG1520 | KOG | Predicted alkaloid synthase/Surface mucin Hemomucin | JGI | ISS | |
| PTHR10426 | Panther | STRICTOSIDINE SYNTHASE-RELATED | JGI | ISS | |
| PTHR10426:SF5 | Panther | MUCIN-RELATED | JGI | ISS | |
| PF03088 | PFAM | Strictosidine synthase | JGI | ISS | |
| UniRef100_B9T2X5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9T2X5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8U7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8U7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g31330 not represented in the dataset |
Glyma19g31330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g28580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g132400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g31330.1 sequence type=CDS gene model=Glyma19g31330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACACAGGGCTCGTTGCAGGTGCAGCCTTGCTTGCACTCTTGGCTATCACCTTCTCCTTGTTGAACCCTCAAACCCTGTTTTCTCCGCCTCATGTTCCGGGCTCGAAGGATCACCTTCACGCTGCTCGGTTGCTCCATGTCACCGGAGCCGTCGGGCCGGAGAGTCTTGTCTTCGACGCCGACGGCGGAGGGCCCTACACCGGCGTCGCCGATGGCCGGATTCTCAAGTGGGAAGGGGAAGAGCGAGGTTGGACTGAATTTGCTGTCACAAGTTCCAATAGGTCGGACTGTGTACGCCCATTTGCACCAGAGTTGGAGCACATTTGTGGGAGGCCATTAGGACTAAGATTTGACAAGAAAAATGGAGATCTGTACATTGCTGATGCCTACCTAGGCCTAAAAGTAGTGGGGTCTGCAGGGGGTTTGGCCACCGAAGTGGTAACAGAAGTTGAAGGTCAGCCCTTGCAGTTCACCAATGACATGGACATCAGTGAAGATGAAGAAGTGATATACTTCACTGATTCAACCACAATCTTCCAGAGAAGGCAATTTATGCTTGTACTCCTAAGTGGAGACAAGACTGGCCGGTTAATGAAATACAACAAGTCAACAAAAGAAGTGACGGTCTTATTACGCGGCCTTGCTTTTCCCAATGGTGTTGCTTTAAGCAAAGACGGATCATTCGTTCTGGTAGCAGAAACCACTACTTGCAGGATCTTGCAGCTTTGGCTTCGTGGACCTAAGGCTGGCCATGTGGATACATTTGCAGTTCTGCCTGGCTTTCCAGACAATGTGAGAAGAAATTCACAAGGGCATTTCTGGGTGGCTCTGCATGCAAAGGGAAGTCGTTTCGCGAAGTGGGTTTCTTCCAATCCATGGGCGGGAAAGGCGTTGCTTAAGATTGGATTTAACTTCAAGCAGTTGCACTCATCATTTGCAGGGTGGAAGCCTCATGCTGCTGCTGTAAAGCTGAGTGATAAAGGAGAGATATTAGAAGTCTTGGAAGATTGTGATGGGAAGACCTTGAAGTTCATCAGTGAAGTGGAAGAGAAAGATGGGAAGCTTTGGATTGCATCAGTGTTGATGCCTTTCATTGGCATTTATGGTTTATAA
>Glyma19g31330.1 sequence type=predicted peptide gene model=Glyma19g31330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNTGLVAGAALLALLAITFSLLNPQTLFSPPHVPGSKDHLHAARLLHVTGAVGPESLVFDADGGGPYTGVADGRILKWEGEERGWTEFAVTSSNRSDCVRPFAPELEHICGRPLGLRFDKKNGDLYIADAYLGLKVVGSAGGLATEVVTEVEGQPLQFTNDMDISEDEEVIYFTDSTTIFQRRQFMLVLLSGDKTGRLMKYNKSTKEVTVLLRGLAFPNGVALSKDGSFVLVAETTTCRILQLWLRGPKAGHVDTFAVLPGFPDNVRRNSQGHFWVALHAKGSRFAKWVSSNPWAGKALLKIGFNFKQLHSSFAGWKPHAAAVKLSDKGEILEVLEDCDGKTLKFISEVEEKDGKLWIASVLMPFIGIYGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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