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Report for Sequence Feature Glyma19g31271

Feature Type:gene_model
Chromosome:Gm19
Start:39048432
stop:39050356
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g31271
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07040AT Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926 SoyBaseE_val: 2.00E-36ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF121Panther SUBFAMILY NOT NAMED JGI ISS
PF00931PFAM NB-ARC domain JGI ISS
UniRef100_G7JA00UniRef Annotation by Michelle Graham. Most informative UniRef hit: NBS-containing resistance-like protein n=1 Tax=Medicago truncatula RepID=G7JA00_MEDTR SoyBaseE_val: 1.00E-77ISS
UniRef100_I1N0V7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N0V7_SOYBN SoyBaseE_val: 7.00E-98ISS

Expression Patterns of Glyma19g31271
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g31271 not represented in the dataset
Glyma19g31271 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g31271 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g31271
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g31271
>Glyma19g31271.2   sequence type=transcript   gene model=Glyma19g31271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAACTTGCTAACGAAAAATTTAACAAAAAACAAAAACTTGGGAATGAATATTCGAAAATCTTCCTCTCACTGTAGACTTATTAATAAATAAGTATCAGAACACAAAATTCTGAGATCACACAATACACCACAGACAGAAATTAAAGCTAGCTACCCTCAAATGGCGGAAATGGCAGTGTCCTTGGCACGAACAAATTGCTTCCACTACTAAGCGATGAAACAAAATTGGTCTGGGACATCCCAAAAGAATTTGCAGACATAAAAAAGGAACTAGAATACATTCAAGCTTTCCTCAAGGATGCAGATTCAAGGGCAGCAGAAGGAGGCAACGCAAATGAGGGAATCAAAACATGGGTGAAAGAGTTGAGGGAAGCATCTTTTCGCATAGAAGATGCCATTGATGAATACATGATCCATGTGGAACAAGAGCATCATGATCCTGGATGTGCTGCTTTACTCTGTCAGATTATTCACTTGATTGAAACTTTGATGCCTCGTCATCGAATAGCATCAGGGATTCAGCAGATTAAGTCAGTTATTGACAGAATCAAGCAGAGAGGAAAAGAGTATAACTTCCTAAGACAAAGTGTCCAATGGATTGACCCTGGATCGGCTTCCCCTCACCTTGATGAAGATCAAATTGTTGGCTTTGAAGACCCAAGAGATGAATTGATCGGTTGGTTAGTAAAGGGACCAGTGGAGCGCATTGTCATATCTGTGGTAGGAATGGGAGGACAAGGAAAAACCACTCTTGTTGGCAGAGTTTTCAACAACCAGGAGGTGATTGCACACTTTGGTGGCTGTCGTGCATGGATCACAGTCTCTCAATCCTACACTGTGGAAGGATTGCTGAGAGACGTGTTGGAGAAGATGTGCAAAGAAATAAGAGAGGATCCTCCTCTAGGAATTGGGTTTCAAAGCTTTGAAATATAGATTCTCCATGCTGCGCTTTCAACGATGCATTGGTCCATGGATTAAAAAAAATGTGAAATTGTCCTTCTTTAACAAAGTCATCTATGTTTACGACAATTTGTGATGTATAATAATGTGTAAAACAAGTTATAACAGTATGTCTTTTAAGGATTGTGAAATTTTTTTTTATTTGGTTTGTGTCTTTTTATTTGGTAATAAGAAAGAAAAAAAACTTGTTGTAATTTATTTGTTTTGTAAAGTTTCATTCCTTATTTTATTTAAAGTTTTCTTGCTAAATTTTCCTCTACCAGCTCTTTCTCTAGTGGACATTGTTAGTAAACAACCTATTAAAGAAGTTTACAGCAGGAAGAAGAGGGGTAACTGAATATTAGGAGCCACATGAAGTTGTTAATAATAGTGATTGTCGGGTAGATAATCAATTAGAAATCCAAAAATGTATCTGAAAATTCAGAGATATCCCAGAAAACCATTAATCTGATTTGAGATGAGTGGGATGCACTAGACCCATATCTTGTAAAGGTGTTGATGACTTTTCTTACATTTGGTTTATGCCTCTTCA
Coding sequences of Glyma19g31271
>Glyma19g31271.1   sequence type=CDS   gene model=Glyma19g31271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCATGTGGAACAAGAGCATCATGATCCTGGATGTGCTGCTTTACTCTGTCAGATTATTCACTTGATTGAAACTTTGATGCCTCGTCATCGAATAGCATCAGGGATTCAGCAGATTAAGTCAGTTATTGACAGAATCAAGCAGAGAGGAAAAGAGTATAACTTCCTAAGACAAAGTGTCCAATGGATTGACCCTGGATCGGCTTCCCCTCACCTTGATGAAGATCAAATTGTTGGCTTTGAAGACCCAAGAGATGAATTGATCGGTTGGTTAGTAAAGGGACCAGTGGAGCGCATTGTCATATCTGTGGTAGGAATGGGAGGACAAGGAAAAACCACTCTTGTTGGCAGAGTTTTCAACAACCAGGAGGTGATTGCACACTTTGGTGGCTGTCGTGCATGGATCACAGTCTCTCAATCCTACACTGTGGAAGGATTGCTGAGAGACGTGTTGGAGAAGATGTGCAAAGAAATAAGAGAGGATCCTCCTCTAGGTATTTCTAAAATGGATCTAAATTCATTGATTGTTGAAGTGAAAAACTATTTGCAAAAAAAGAGGTATGTTGTTATTTTTGATGATGTGTGGAGTGTGGAACTTTGGGGTCAGATTGAAAATGCCATGCTTGATAATAACAATGGAAGTAGGATATTAATCACAACTAGGAGCAAGGATGTTGTGGACTCTTGA

>Glyma19g31271.2   sequence type=CDS   gene model=Glyma19g31271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCATGTGGAACAAGAGCATCATGATCCTGGATGTGCTGCTTTACTCTGTCAGATTATTCACTTGATTGAAACTTTGATGCCTCGTCATCGAATAGCATCAGGGATTCAGCAGATTAAGTCAGTTATTGACAGAATCAAGCAGAGAGGAAAAGAGTATAACTTCCTAAGACAAAGTGTCCAATGGATTGACCCTGGATCGGCTTCCCCTCACCTTGATGAAGATCAAATTGTTGGCTTTGAAGACCCAAGAGATGAATTGATCGGTTGGTTAGTAAAGGGACCAGTGGAGCGCATTGTCATATCTGTGGTAGGAATGGGAGGACAAGGAAAAACCACTCTTGTTGGCAGAGTTTTCAACAACCAGGAGGTGATTGCACACTTTGGTGGCTGTCGTGCATGGATCACAGTCTCTCAATCCTACACTGTGGAAGGATTGCTGAGAGACGTGTTGGAGAAGATGTGCAAAGAAATAAGAGAGGATCCTCCTCTAGGAATTGGGTTTCAAAGCTTTGAAATATAG
Predicted protein sequences of Glyma19g31271
>Glyma19g31271.1   sequence type=predicted peptide   gene model=Glyma19g31271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIHVEQEHHDPGCAALLCQIIHLIETLMPRHRIASGIQQIKSVIDRIKQRGKEYNFLRQSVQWIDPGSASPHLDEDQIVGFEDPRDELIGWLVKGPVERIVISVVGMGGQGKTTLVGRVFNNQEVIAHFGGCRAWITVSQSYTVEGLLRDVLEKMCKEIREDPPLGISKMDLNSLIVEVKNYLQKKRYVVIFDDVWSVELWGQIENAMLDNNNGSRILITTRSKDVVDS*

>Glyma19g31271.2   sequence type=predicted peptide   gene model=Glyma19g31271   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIHVEQEHHDPGCAALLCQIIHLIETLMPRHRIASGIQQIKSVIDRIKQRGKEYNFLRQSVQWIDPGSASPHLDEDQIVGFEDPRDELIGWLVKGPVERIVISVVGMGGQGKTTLVGRVFNNQEVIAHFGGCRAWITVSQSYTVEGLLRDVLEKMCKEIREDPPLGIGFQSFEI*






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