Glyma19g31240 - SoyBase

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Report for Sequence Feature Glyma19g31240

Feature Type:	gene_model
Chromosome:	Gm19
Start:	39004994
stop:	39008915
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57090	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:21128627-21129981 FORWARD LENGTH=170	SoyBase	E_val: 1.00E-76	ISS
GO:0007005	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrion organization	SoyBase	N/A	ISS
GO:0016559	GO-bp	Annotation by Michelle Graham. GO Biological Process: peroxisome fission	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3364	KOG	Membrane protein involved in organellar division	JGI		ISS
PTHR13247	Panther	TETRATRICOPEPTIDE REPEAT PROTEIN 11 (TPR REPEAT PROTEIN 11)	JGI		ISS
UniRef100_A2Q2Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial fission 1 protein n=1 Tax=Medicago truncatula RepID=A2Q2Z4_MEDTR	SoyBase	E_val: 6.00E-99	ISS
UniRef100_C6T0K9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0K9_SOYBN	SoyBase	E_val: 6.00E-130	ISS

Expression Patterns of Glyma19g31240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31240

Paralog	Evidence	Comments
Glyma03g28500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g131600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g31240

Limit To All Plant Sequences

>Glyma19g31240.2   sequence type=transcript   gene model=Glyma19g31240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTGTACAGGTCAAAAAATGCTGCATAATTCCAAAAACCCCAAACCTATAAATACTAAACTATTGAGTCACTGATTAATGCTTGTTATAAGTGATAACTGCTAATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGAGAATCTTAAACGATTATTTCCTCAGAAATAATCTCAACCGAACAAGCTTAGTCTCTTTTTTGTTTTACTTTCTTCTGCAAATATGTTAAAGTCAATGGGAAATAATCCTCCGTTGACAACTACTGTTGTCAAGTTGTCAACATTTTTCTGTTTGTTAAAAGGAGCATTTTTACTGAAGAGATGATTTCAAATTTCCCTTTACAAATGCAATTTTTTTTTAAAAAAAAATTCTAGGTGGGTTACACATGCCGTACGTGGCAATAACC

Coding sequences of Glyma19g31240

Limit To All Plant Sequences

>Glyma19g31240.1   sequence type=CDS   gene model=Glyma19g31240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGCATTAACTAAGGAATTGCAAATGTTCGTTGTATCAATGCCAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGA

>Glyma19g31240.2   sequence type=CDS   gene model=Glyma19g31240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCAAGTTCGGAAGCCTCTTCGAAACCATCGGAAACTTCTTCACCGGCGGTGAGCAGATCCCGTGGTGCGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGTTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGTGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTAGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTCAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTCGGTGGCATAGCTACGGCACTGGCCAGGAGGAGTTGA

Predicted protein sequences of Glyma19g31240

Limit To All Plant Sequences

>Glyma19g31240.1   sequence type=predicted peptide   gene model=Glyma19g31240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKFGSLFETIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKALTKELQMFVVSMPDGVIGIGITATAVGLIVGGIATALARRS*

>Glyma19g31240.2   sequence type=predicted peptide   gene model=Glyma19g31240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKFGSLFETIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIATALARRS*

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