Glyma19g31180 - SoyBase

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Report for Sequence Feature Glyma19g31180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38949059
stop:	38952577
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41370	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein / BTB/POZ domain-containing protein \| chr2:17238019-17240203 REVERSE LENGTH=491	SoyBase	E_val: 0	ISS
GO:0009864	GO-bp	Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0009954	GO-bp	Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0010227	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ abscission	SoyBase	N/A	ISS
GO:0010254	GO-bp	Annotation by Michelle Graham. GO Biological Process: nectary development	SoyBase	N/A	ISS
GO:0010434	GO-bp	Annotation by Michelle Graham. GO Biological Process: bract formation	SoyBase	N/A	ISS
GO:0010582	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
PF11900	PFAM	Domain of unknown function (DUF3420)	JGI		ISS
UniRef100_G8GTP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ ankyrin repeat protein n=1 Tax=Glycine max RepID=G8GTP2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1N8T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8T1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31180

Paralog	Evidence	Comments
Glyma03g28440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g131000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31180

Limit To All Plant Sequences

>Glyma19g31180.1   sequence type=CDS   gene model=Glyma19g31180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCTCTGGATTACCTCAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGCCGTCTGGTCCACGCGCACCGCTGCATACTCGCGGCGAGGAGTCTCTTCTTCAGAAAATTCTTTTGTGGGCCGGACCCACCTTCCGGCCTCGACCCCACCGGACCGCGAGGAGTTAACTCCTCGCGATCCGGAGGGGTCATCCCAGTCAACTCGGTTGGCTACGAGGTCTTTCTCCTCATGCTCCAGTTTCTATACAGTGGCCAAGTCTCCATCGTGCCTCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGGGGATGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTCGGGGTCGAACAGCTCGCATTACTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCAACATGTTCCCACTTGGTGGCAAAATCAGGTCTTCCTCCAGAGGTTCTAGCAAAGCACTTACCAATAGACATTGTGGCGAAAATCGAAGAGCTCCGTCTCAAATCCTCCCTGGCACGCCGCTCATTGGTGCCTTCTCACCACCACCATCACCACCACCACCACCACCACGCGGCGGCGGCACTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGACGTTGAACTGGTGAAGCTAATGCTAATGGGAGAAGGCCTAAACCTCGACGAGGCTTTGGCCTTACCCTACGCAGTGGAGAATTGCAGCAGAGAAGTGGTGAAGGCCTTACTGGAGCTTGGTGCAGCCGACGTTAACTACCCGTCGGGTCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCCCCCGATATGGTGGCGGTGCTTCTTGACCACCACGCGGACCCCAACGTCAGAACTGTCGATGGGGATCACAACAACAACAGCAGCAGCAGCAGTGGCAACAACAACAACAACAACATTGGTAACCTTAACTTGGATTCGAGGTTGGTGTATCTCAACCTTGGTGCCACCGCTTCAATGAGTTCAAGGTTGGATAATGCTGAGGACGAGAGAGAAGCCATGAACCAAACCATGTACCATCATCACCACTCTCATGACTACTAG

Predicted protein sequences of Glyma19g31180

Limit To All Plant Sequences

>Glyma19g31180.1   sequence type=predicted peptide   gene model=Glyma19g31180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRGVNSSRSGGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHHHHHAAAALDLEDQKIRRMRRALDSSDVELVKLMLMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGDHNNNSSSSSGNNNNNNIGNLNLDSRLVYLNLGATASMSSRLDNAEDEREAMNQTMYHHHHSHDY*

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