SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04130 | AT | Annotation by Michelle Graham. TAIR10: DNA GYRASE B2 | chr5:1122084-1128031 REVERSE LENGTH=732 | SoyBase | E_val: 0 | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA topological change | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009330 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA topoisomerase complex (ATP-hydrolyzing) | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003916 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase activity | SoyBase | N/A | ISS |
| GO:0003918 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA topoisomerase type II (ATP-hydrolyzing) activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| KOG0355 | KOG | DNA topoisomerase type II | JGI | ISS | |
| PTHR10169 | Panther | DNA TOPOISOMERASE/GYRASE | JGI | ISS | |
| PF00204 | PFAM | DNA gyrase B | JGI | ISS | |
| PF00986 | PFAM | DNA gyrase B subunit, carboxyl terminus | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| UniRef100_B9S845 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA gyrase subunit B, putative n=1 Tax=Ricinus communis RepID=B9S845_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8R8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8R8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g31030 not represented in the dataset |
Glyma19g31030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g28290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g130000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g31030.1 sequence type=CDS gene model=Glyma19g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACATGTTCTTCTGCTTCGCCCTCCTCTGCTTCGCGTCATGTCCTTTCGCTTCATCACCTCCTTTTCCTTCCACTCGCGCCTTTCTTCATTCCCTTCTTCTACTCTCTCCAAAACCAGGACGAGTTTTCCTCTGAGAAAATTTTGGGCTCCCTGTTCGGTTCCAAATGCGGTCACTCCAAGGGCGTTTATGTCTTCTATCTCGACCACCGAAGCTTTTCACAATAGTGAAAGTCCCACAGCTTATAGTTCTGATCAAATTCAGGTGCTTGAAGGCTTGGACCCTGTGAGGAAAAGGCCCGGGATGTATATTGGAAGCACCGGCCCACGAGGGTTGCACCATTTGGTGTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGGTTTGCTTCCAAGATTGATGTTGTTTTACTTGCGGATGATTCTGTGAGCATCACAGACAATGGTCGCGGGATTCCTACTGACTTGCATCCAGTTACAAATAAATCTGCCTTGGAGACAGTGTTGACGGTCTTGCATGCTGGTGGAAAATTCGGTGGTGCCAACAGTGGCTACTCTGTTTCAGGAGGTTTACATGGTGTTGGTTTGTCTGTTGTTAATGCTTTGTCTGAGTTGCTAGAGATAACAGTTTGGCGTGATGGAATGGAATACATGCAAACATATTCTCGTGGAAAGCCAGTGTCAATTCTGAAATGCCTTGTGCTTCCAGATGAAAGGAAAGATCTTCGAGGGACACGTGTTAGATTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGATCACAACACAATTGCCGGACGCATTAGGGAATTAGCTTTCCTCAACCCAAAGCTTACAATCACGTTTCGGAAAGAGGACAATGATCCAGAAAAAGTTCAATATAATGAATATTTCTATGCTGGGGGATTGGTTGAATATGTGAAATGGCTTAACACCGATAAGAAAGCTCTTCATGATGTTCTGAGTTTTAGAAAAGAAACAGATGGCATCACAGTTGATATAGCTTTTCAATGGTCTGAAGATGCATATTCAGATACAATACTGGGATATGCTAATAGTATACGCACTATTGATGGTGGCACTCATATTGATGCTATGAAGGCTTCTATAACAAGAACTCTTAATAGTCTTGGAAAGAAGTCCAAAGTTATTAAGGAGAAGGATATTACTCTAAGTGGCGAGCATGTGAGAGAGGGTCTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCTGAGTTTGAAGGACAAACAAAGACAAGGTTAGGAAATCCAGAGGTGCGAAAAGTGGTTGATCAATCTATTCAGGAATATCTTACTGAGTATTTAGAATTGCATCCGGATGTTCTTGATTCAGTACTTTCTAAAGCTCTTAATGCTTTTAAGGCAGCTCTGGCAGCAAAAAGAGCAAGGGAATTGGTGAGACAAAAGAGTGTTTTGAGATCTTCATCCCTTCCAGGAAAACTAGCTGATTGTTCATCTACAGATCCTGAAGAATGTGAAATCTTTATAGTTGAAGGTGATTCAGCTGGAGGAAGTGCTAAGCAAGGGCGTGACAGGCGCTTCCAGGCCATTCTCCCTCTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATTCTTGGTCTTGGTCTCGGGGTGAAGGGAGAGGATTTTAAGAAAGATGCACTCCGATATCATAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCCCACATCCGAACACTGCTACTGACATTTTTCTTCAGATATCAGAGGGCTTTGTTTGATGAAGGTTGCATATATGTTGGTGTTCCACCATTGTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGCTATGATGATGCTGACCTTAAAAAGCTTCAAAGATCATTCCCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGTTGGGAGAGATGATGCCTTTACAACTATGGGAAACAACCATGGATCCAGAACGCAGGTTATTGAAGCAATTAAAAGTTGAGGATGCAGCAGAAGCAAATATTGTTTTTTCCTCTCTTATGGGTACTCGGGTGGATTTTCGGAAGGAACTTATACGAAACTCTGCAAGCATGATTGATCTTGATCAGCTAGATATTTGA
>Glyma19g31030.1 sequence type=predicted peptide gene model=Glyma19g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAHVLLLRPPLLRVMSFRFITSFSFHSRLSSFPSSTLSKTRTSFPLRKFWAPCSVPNAVTPRAFMSSISTTEAFHNSESPTAYSSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLLADDSVSITDNGRGIPTDLHPVTNKSALETVLTVLHAGGKFGGANSGYSVSGGLHGVGLSVVNALSELLEITVWRDGMEYMQTYSRGKPVSILKCLVLPDERKDLRGTRVRFWPDKEVFTTAIQFDHNTIAGRIRELAFLNPKLTITFRKEDNDPEKVQYNEYFYAGGLVEYVKWLNTDKKALHDVLSFRKETDGITVDIAFQWSEDAYSDTILGYANSIRTIDGGTHIDAMKASITRTLNSLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSTDPEECEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVPPLYKVVRGKQVHYCYDDADLKKLQRSFPPNASYNMQRFKGLGEMMPLQLWETTMDPERRLLKQLKVEDAAEANIVFSSLMGTRVDFRKELIRNSASMIDLDQLDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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