Glyma19g31020 - SoyBase

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Report for Sequence Feature Glyma19g31020

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38730306
stop:	38734514
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80270	AT	Annotation by Michelle Graham. TAIR10: PENTATRICOPEPTIDE REPEAT 596 \| chr1:30181265-30183331 FORWARD LENGTH=596	SoyBase	E_val: 0	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF113	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KQR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KQR8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8R7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8R7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g31020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31020

Paralog	Evidence	Comments
Glyma03g28271	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g129900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31020

Limit To All Plant Sequences

>Glyma19g31020.1   sequence type=CDS   gene model=Glyma19g31020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGCTCTTCGTCGAGCTTCGATTCCTCTCAGGACCCGAGGGTTTAATGTGAGAGCTTCCTGTGTCAAATTAGCGGGAACTAGTTCTGTTGAAGAAGAGGATGTTATCAATGAATCTCATGGAATAACGTATGGTGGATTTTTATCGCCGAATATGCGATTCCATTCGGTACATAATGCCTCCCTGAATTTTACTGTGGGAAAACGTGCGCTTTCTTCAAGTAGCACGAAAGAGGAGGATGATTTGGAGGATGGGTTTTCCGAGCTGGAGATGCCTGCCGGCAGTGGATATGAAAGTGAGGATCTGTTAACTTCCGATGATGGCGACCTATCGGATGATGGTCAGAAGGAGGATGTTGAGGAGCCACCACACAATGAGGTTGATGAGGCGGCCAAGGAGAAAGGAAACCCGCGTCGTGGAAGGGTTGAATCAAAGCTATTCAATGAGATCATGAATGCACAGGGTATCTCTCTTCATTCGGTTCTGGAAAAATGGTTAGAAAAAGGGAATGAGCTTACCAGAGAGGAGGTTTCGCTTGCCATGCTTTATCTTCGAAAGCGTAAGCTGTTTGGGAGAGCTTTGCTGCTCTCAGAATGGCTCGAGTCAAAAAAGGAGTTTGAGTTTATTGAAAGAGATTATGCAAGTCGGCTTGATTTAATTGCCAAATTGCGTGGCTTACATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGCAGAGAGATAATGTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAATAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGACTTGGATTTTCCTATTACAGTATTTACTTGCAATCAGTTGCTATTTCTGTATAAGAGGAATGACAGGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATCAACCCTTCTTCTCATACTTACTCGATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCAAATTGTTGATAGGATGAAGGCTCAAGGCATTGAACCAGACATCAACACGCAGGCTGTTTTGATTAGGCATTACATCTCTTCTGGGCTTCAAGATAAAGCTGAAACTTTATTAAAGGAGATGGAAGGGGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAAGTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTAGGAGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATTATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGTTCCATACTGCTGAAGGTTTATGCAAATAATAAGATGCTAATGAAGGGTAAGGATCTTATTAAGCGAATGGGAGATGGTGGGTGCCGAATTGGCCCATTGACCTGGGATGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCGGATTCTGTTCTTCAGAAGGCAGCCCAGCAGAGCCAGATGAAGCCAATATTTTCTACCTACCTAACTATTTTGGAACAGTATGCTAATAGGGGTGACATCCATAACTCGGAGAAGATTTTTCTTAGAATGAAACAAGCTGATTATCCATCTAAAGCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCATATGGGATTAGGGACAGGTTGAGAGCTGATAGTATATATCCCAATAGAAATTTGGCAAACCAGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTCCGATTTGCTTGATTGA

Predicted protein sequences of Glyma19g31020

Limit To All Plant Sequences

>Glyma19g31020.1   sequence type=predicted peptide   gene model=Glyma19g31020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWALRRASIPLRTRGFNVRASCVKLAGTSSVEEEDVINESHGITYGGFLSPNMRFHSVHNASLNFTVGKRALSSSSTKEEDDLEDGFSELEMPAGSGYESEDLLTSDDGDLSDDGQKEDVEEPPHNEVDEAAKEKGNPRRGRVESKLFNEIMNAQGISLHSVLEKWLEKGNELTREEVSLAMLYLRKRKLFGRALLLSEWLESKKEFEFIERDYASRLDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDFPITVFTCNQLLFLYKRNDRKKIADVLLLMENENINPSSHTYSILIDTKGQSKDIDGMDQIVDRMKAQGIEPDINTQAVLIRHYISSGLQDKAETLLKEMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRYDECLGAIEAWGKLNKIDEAEKVFEIMVKKWKLSSKTCSILLKVYANNKMLMKGKDLIKRMGDGGCRIGPLTWDAIVKLYVQAGEVEKADSVLQKAAQQSQMKPIFSTYLTILEQYANRGDIHNSEKIFLRMKQADYPSKAKMYQVLMNAYINAKVPAYGIRDRLRADSIYPNRNLANQLVQVDGFRKNPVSDLLD*

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