Glyma19g31010 - SoyBase

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Report for Sequence Feature Glyma19g31010

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38721363
stop:	38722300
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g31010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07490	AT	Annotation by Michelle Graham. TAIR10: ARF-GAP domain 11 \| chr3:2391189-2391650 FORWARD LENGTH=153	SoyBase	E_val: 3.00E-71	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG0027	KOG	Calmodulin and related proteins (EF-Hand superfamily)	JGI		ISS
PTHR10891	Panther	CALMODULIN	JGI		ISS
PTHR10891:SF141	Panther	CALCIUM-BINDING PROTEIN	JGI		ISS
PF00036	PFAM	EF hand	JGI		ISS
UniRef100_G7KQR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein n=1 Tax=Medicago truncatula RepID=G7KQR7_MEDTR	SoyBase	E_val: 5.00E-80	ISS
UniRef100_I1N8R6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8R6_SOYBN	SoyBase	E_val: 4.00E-103	ISS

Expression Patterns of Glyma19g31010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g31010

Paralog	Evidence	Comments
Glyma03g28260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g31010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g129800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g31010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g31010

Limit To All Plant Sequences

>Glyma19g31010.1   sequence type=CDS   gene model=Glyma19g31010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAAGGAGAGCTTGCACGAGTTTTTCAAATGTTTGATCGAAATGGGGATGGCCGCATCACGCGAAAAGAGCTTAGTGACTCCTTAAAAAACCTTGGAATCACCATCTCGGAGCAAGATTTGACCCAAATGATCGAGAAGATCGACGTAAATGGAGATGGGTTCGTGGACATCAACGAGTTTGGCGAGTTGTACCAAACAATAATGGACGAGAAAGACGAGGAGGAGGATATGAAGGAGGCATTCAATGTGTTTGATCAAAATGGAGATGGGTTCATCACAGGAGAGGAATTGAGTGCGGTGTTGTGTTCTTTAGGCCTAAAGCATGGCAAAACCATAGAGGATTGCGAAAGCATGATCAAGAAAGTGGACGTGGATGGTGATGGAATGGTTGACTACAAAGAGTTTAAGCAAATGATGAAGGCTGGGGGATTTGCCGCGGCTTCGTTAAGTTGA

Predicted protein sequences of Glyma19g31010

Limit To All Plant Sequences

>Glyma19g31010.1   sequence type=predicted peptide   gene model=Glyma19g31010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQGELARVFQMFDRNGDGRITRKELSDSLKNLGITISEQDLTQMIEKIDVNGDGFVDINEFGELYQTIMDEKDEEEDMKEAFNVFDQNGDGFITGEELSAVLCSLGLKHGKTIEDCESMIKKVDVDGDGMVDYKEFKQMMKAGGFAAASLS*

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