Glyma19g30940 - SoyBase

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Report for Sequence Feature Glyma19g30940

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38636057
stop:	38644251
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41140	AT	Annotation by Michelle Graham. TAIR10: CDPK-related kinase 1 \| chr2:17150492-17153378 FORWARD LENGTH=576	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0004723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI		ISS
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI		ISS
PTHR24349:SF13	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1N8Q8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8Q8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HT01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase-like protein n=1 Tax=Medicago truncatula RepID=Q2HT01_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g30940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g129200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30940

Limit To All Plant Sequences

>Glyma19g30940.2   sequence type=transcript   gene model=Glyma19g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGTTGTTGGTTATGAAAATCAGTAATTTGCTCTTTGTTCTTATGAAAGTGGGGGTTGTTTGGCAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCAAGCTCTGACTGGGCATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACAATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCCAGAATTGTTATGATTCAGATATTAAGTGTGGTGGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAACCAGAGAATTTTCTCTATATTTCTAAGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCGTATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCCGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGAGGAAGCTCCTTGGCCATCGTTATCAGCTGACGCAAAAGATTTTGTGAAGAGACTGTTGAATAAGGATTATCGTAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTTGTGAATCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAACTTATATATGTTCATCTTCATTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACACTAGTGCAGCTAGCATATCTGAGAGAACAATTCAATATGTTAGGGCCAAACAAAAGTGGGTTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACCGATGCCTCAAAGGATTCACGTGTCTTAGATTATGTGAACATGGTTAGTTCAATTCAATATCGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCGTACGAGATGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCTTCGGAACTTGGGCTTAGCCCTTCAGTGCCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTTAGGCTTCTGCATGGAGTTTCTTCTCGCACATTTCAGAAGGCTTGAGAGAAAATACACGTGATTACTGTTATTTTTTTGTCCCCCTTATTGATCATAAACCTTTTGAATGCATGACACATGAGCAAACTCCAACAGCAGGTTTCTTCATCTTGATTGCAAACATGGCTTCAGCAAAGCCAAAAGCTATATGTAGCTTGAAGGGAGTTTGTTGCCACTGAAGTGGTATGCAACACATCTTCATTAGTTCTACAAACACAAAAACACTTTGCTCCATCCTGTTTCTACTTCTTCAGAGTTCAGATTGATTGGTGGTGCTGGAGTTAAGGCTTGTATAGATGAAAGTAGAGCACAGGTTGTACTTAGAACTAGTGGAACTTCCATAAAGTGAGTTGTGTTTTCGGGTTTATCCCATGTGTACCCATGACACTTGTCAATAAACTATTTCCACTTATGCGAACTCATTTATAGTTGATAACTTTTTTTTAATACCTCAG

Coding sequences of Glyma19g30940

Limit To All Plant Sequences

>Glyma19g30940.1   sequence type=CDS   gene model=Glyma19g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCTGTAGGAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCAAGCTCTGACTGGGCATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACAATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCCAGAATTGTTATGATTCAGATATTAAGTGTGGTGGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAACCAGAGAATTTTCTCTATATTTCTAAGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCGTATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCCGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGAGGAAGCTCCTTGGCCATCGTTATCAGCTGACGCAAAAGATTTTGTGAAGAGACTGTTGAATAAGGATTATCGTAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTTGTGAATCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAACTTATATATGTTCATCTTCATTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACACTAGTGCAGCTAGCATATCTGAGAGAACAATTCAATATGTTAGGGCCAAACAAAAGTGGGTTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACCGATGCCTCAAAGGATTCACGTGTCTTAGATTATGTGAACATGGTTAGTTCAATTCAATATCGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCGTACGAGATGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCTTCGGAACTTGGGCTTAGCCCTTCAGTGCCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTTAGGCTTCTGCATGGAGTTTCTTCTCGCACATTTCAGAAGGCTTGA

>Glyma19g30940.2   sequence type=CDS   gene model=Glyma19g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATCAGTAATTTGCTCTTTGTTCTTATGAAAGTGGGGGTTGTTTGGCAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCAAGCTCTGACTGGGCATAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACAATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAAGATGCCAGAATTGTTATGATTCAGATATTAAGTGTGGTGGCTTTCTGTCATCTGCAGGGTGTTGTTCATCGTGATCTCAAACCAGAGAATTTTCTCTATATTTCTAAGGATGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCGTATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCCGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGAGGAAGCTCCTTGGCCATCGTTATCAGCTGACGCAAAAGATTTTGTGAAGAGACTGTTGAATAAGGATTATCGTAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTTGTGAATCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAACTTATATATGTTCATCTTCATTACGCAAATCAGCATTAGGGGCTCTTGCAAAGACATTAACACTAGTGCAGCTAGCATATCTGAGAGAACAATTCAATATGTTAGGGCCAAACAAAAGTGGGTTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACCGATGCCTCAAAGGATTCACGTGTCTTAGATTATGTGAACATGGTTAGTTCAATTCAATATCGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCGTACGAGATGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCTTCGGAACTTGGGCTTAGCCCTTCAGTGCCTATTCATGTGGTACTCCAAGATTGGATAAGACACTCAGATGGGAAGCTTAGCTTCTTGGGGTTTGTTAGGCTTCTGCATGGAGTTTCTTCTCGCACATTTCAGAAGGCTTGA

Predicted protein sequences of Glyma19g30940

Limit To All Plant Sequences

>Glyma19g30940.1   sequence type=predicted peptide   gene model=Glyma19g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSCRKMTTAIAIEDVRREVKILQALTGHKNLVQFYEAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISKDENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHCDDVKIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTAILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYEMFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA*

>Glyma19g30940.2   sequence type=predicted peptide   gene model=Glyma19g30940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKISNLLFVLMKVGVVWQMTTAIAIEDVRREVKILQALTGHKNLVQFYEAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISKDENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHCDDVKIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTAILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYEMFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA*

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