SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G05055 | AT | Annotation by Michelle Graham. TAIR10: general transcription factor II H2 | chr1:1448913-1450852 REVERSE LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006357 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005675 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: holo TFIIH complex | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2807 | KOG | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 | JGI | ISS | |
| PTHR12695 | Panther | BTF2-RELATED | JGI | ISS | |
| PF04056 | PFAM | Ssl1-like | JGI | ISS | |
| PF07975 | PFAM | TFIIH C1-like domain | JGI | ISS | |
| UniRef100_G7L5Y2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: General transcription factor IIH subunit n=1 Tax=Medicago truncatula RepID=G7L5Y2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8Q6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8Q6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g30920 not represented in the dataset |
Glyma19g30920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g129000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30920.2 sequence type=transcript gene model=Glyma19g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTAATAATAATAAAAAAAAAACACGTGAAATAGTGCATTGTCAACTTTTCTCTTCATTATGGTTATACAGAGTAAGTAGCCCTATTTAAATGGTACAAAAAAAAAAAAAAAAAAAACTAAAATCCACTCATCAAAGAGAAGCCCAGGCGGCGGTGCCACAATCGCTAACAGCGGCGACCCTGGGCGACTGTGAGGGTGCGAACAAGAAGAGCTCTTAGGTTTTCAAAACCATTAATCGTTGCTGCTTATTTGATTTGTTTGAGCAATTATGAACAATGTTGCTGAAAGACCGCTTAACGGAGACGTAGAGGATGATGATGAGGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAGGATAGATCATGGGAGGCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATACTACTGCCATTTACCATGCCCAATATCGCAGGCGCCTTCGTACCCTTGCTGCCACAGCAGCTACTGCACGGATTCAGAAGGGGCTTATACGATACCTGTACATTGTTGTTGACCTGTCCAAGGCAGCTTCAGAGAGAGACTTTCGACCTAGTAGGATGGCCGTGATGGGGAAACAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAACGCACTGGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCAGCTGAAATGTTTGTTTGCAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCTCCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGATCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCCAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGTGTGTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCACTCCATCATCTCAAAATGATTCAAACCACAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTTATTTGCCCAAAATGCAAGCAACAATTCTGCCTCGATTGTGACATCTACGTTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCACTCTAAGTCTGTAACTGCTTCCCAATGATTGCCAATCTTCTGCCTGTGACTTAAAATTTCCATAAAAATGGCGTTCTACATTGTCTCCTTCATATTGCTATACTGCATCCACCCACTGGACCCATGAATAAGTTCCGGTGCCAAGTGACTGACTAACATTATCATCTGCTCATTGATCACAATATTTTGGTGCTTGATCAGTAAATGCTTTGCAGGACAGACAACAGAAGTGATATTACTTATACAAGGAAGTCAAAAGAAGAAGAATTGAAGTGCTTTAGAGAAAAATTGATGAAAAATGAGGAAGAAAAAACATTGAAGAAGAGTTGGAAGAATTGGACAGCTCGCTCAACATGTAACTCTCGCTTAGCAGGCAAAATTAGACTCAGCGTGAAGTCTCACTTAGCACGCAATCTAACTCAACGTGCTGGTCAGGCTTAGCGCGAGAAGGCCCACAAGGAAAGCCCAAGGCGTGCTTAGCGCGTAGATGCGCACTTAACGCGAAGTTAGCGTGAAAAGTAAGCTACCTCATGCTTATAAGGAGTAGGAAACAGAAGAAAAAAACACACCGAATCTCATAACTCTTTAGTGAAAAAATTCAAAGTCTGAGCCTCTCCCTTAGGGGAAACCCTTTTTCCTTAACCATTTTTCATTTTCTTGCTATTAGTCATTGAGTCCCTTCTTCCATTCTTATTAGCTCTTGAAGTGTAAAGTCTCTCATGACTATGAGAGGCTAAACTCTTTTTTGTGTTGAGAGCCTCGAGGTCAAACTCTTAATATAATTCTTC
>Glyma19g30920.1 sequence type=CDS gene model=Glyma19g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAATGTTGCTGAAAGACCGCTTAACGGAGACGTAGAGGATGATGATGAGGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAGGATAGATCATGGGAGGCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATACTACTGCCATTTACCATGCCCAATATCGCAGGCGCCTTCGTACCCTTGCTGCCACAGCAGCTACTGCACGGATTCAGAAGGGGCTTATACGATACCTGTACATTGTTGTTGACCTGTCCAAGGCAGCTTCAGAGAGAGACTTTCGACCTAGTAGGATGGCCGTGATGGGGAAACAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAACGCACTGGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCAGCTGAAATGTTTGTTTGCAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCTCCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGATCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCCAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGTGTGTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCACTCCATCATCTCAAAATGATTCAAACCACAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTTATTTGCCCAAAATGCAAGCAACAATTCTGCCTCGATTGTGACATCTACGTTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCACTCTAAGTCTGTAACTGCTTCCCAATGA >Glyma19g30920.2 sequence type=CDS gene model=Glyma19g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACAATGTTGCTGAAAGACCGCTTAACGGAGACGTAGAGGATGATGATGAGGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCTGAGGATAGATCATGGGAGGCTTTGCAAGAGGATGAATCTGGACTTCTTCGCCCCATAGATACTACTGCCATTTACCATGCCCAATATCGCAGGCGCCTTCGTACCCTTGCTGCCACAGCAGCTACTGCACGGATTCAGAAGGGGCTTATACGATACCTGTACATTGTTGTTGACCTGTCCAAGGCAGCTTCAGAGAGAGACTTTCGACCTAGTAGGATGGCCGTGATGGGGAAACAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAACGCACTGGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCAGCTGAAATGTTTGTTTGCAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCTCCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGATCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCCAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTGAATGTCGTGTGTGTGGATTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCACTCCATCATCTCAAAATGATTCAAACCACAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTTAGTCAGGGAAACAAGCCTGGACTTTCTGTTATTTGCCCAAAATGCAAGCAACAATTCTGCCTCGATTGTGACATCTACGTTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTCCAGGCACTCTAAGTCTGTAACTGCTTCCCAATGA
>Glyma19g30920.1 sequence type=predicted peptide gene model=Glyma19g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNVAERPLNGDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ* >Glyma19g30920.2 sequence type=predicted peptide gene model=Glyma19g30920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNNVAERPLNGDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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