SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26800 | AT | Annotation by Michelle Graham. TAIR10: Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433 | SoyBase | E_val: 8.00E-166 | ISS |
| GO:0006551 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leucine metabolic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004419 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA lyase activity | SoyBase | N/A | ISS |
| KOG2368 | KOG | Hydroxymethylglutaryl-CoA lyase | JGI | ISS | |
| PTHR10277 | Panther | ISOPROPYLMALATE SYNTHASE RELATED | JGI | ISS | |
| PTHR10277:SF1 | Panther | 4-HYDROXY-2-OXOVALERATE ALDOLASE | JGI | ISS | |
| PF00682 | PFAM | HMGL-like | JGI | ISS | |
| UniRef100_A2Q4I7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate carboxyltransferase n=1 Tax=Medicago truncatula RepID=A2Q4I7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8Q3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8Q3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g30880 not represented in the dataset |
Glyma19g30880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g128600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30880.2 sequence type=transcript gene model=Glyma19g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTTGTCCTTATCCAAGTCCAACTCAGCCTCCCACGTCTTTGTTCAGAACTATTCTCATTCATAACATCCATTTTCCTCACAGCTGCAAGCAAGTCTTTGATTTTCCATGGCTATGCATAGGATTCTTCAAAGGGGTCGTCGATTCTTCAATCCTCCACCGCAACTTGTTACTGCTTTCTCAGGTTCTGCTGCTTTTCACGCATTTCCCTCTCATGGGGTTGAATCTCCTCATGTTCGGGAAATTACAAACACAAGAGAAGTTAAGAATGACTTTGACAAATACCATGTAAAGGGTTTATCTCGATGCCTGAACTGGACTTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGGTGCAGTTGATCTTAAGTATATCATTTTTCCTGTTTGTTATGTATTTTAACTTGAATATGTTGTTAAGCAAGGAAGATAATGCATGCTTAACTTAGTACATCATTATAGCTGTCATGTTGAGCCTATAATTTACATTTCATGAAAAGCCCAAGTCTATTATTTTTCATTTTGATTTCATACATTCAACACTAAAGAAAGTGCAGAAAGCAATAGCCGAACAAGTCTCAGGGCCGGGCCTGACTTCTAACAAGTGATTTATTCGGATTTCGGACAGAACAACATGCACCATGGAATGAATAAAAATTGAAAATAAACGAAGCATGCCAAGCGAAGATTCTAGAACCCCCTTGTATAAACAAAAATAGTATAAAATCAAAAAATTAAAATAGAACCAACATTAACCCTTTGTAAAACCCTAACAAGGGACCTCAAATTTCTCAACAAGAGGCTCTCTGTCAGTGTTCTCTCCCTTCCCTTTGGTGTCGTGTCTTCCAAATGGCGAAGCGTTTGATTCCACTGTTCAATCGGGTTTTGGTGGAGAAAATCGTGCCTCCATCGAAGATCACCACTGGCATTTTGTTACCCGAGAAATCCACCAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAAGTTACTATAGCTAGTCATGCACCTGCATGATAGGCACATTGTTTGGCCACTGTAGAATATGTATTTATGTTGGTGTTTACTGTCCCGTGGGCCCTGCCTATAGAAAAGAGAGAGCCAGCAAACACAATTGTAATGCTGTTCACTTCTGCTTGTGTTCTGAGTCAGTTTAGTCGCTTTGATTATTGAGAAAAATCACATGTTGAACATGTACTCCGGAACACACTTATAAAATTGCATAGAATGTCCAAGTTCAACAATTGTCATCTTTGACACATTTGCTATAATAAAGTAGTTGAAAAAATCACTATTTTTCATTTCTGGTTTGACCTTTTCCTTTCCTTCGCGAGTTTTTTGGATACAGAAGGGGCTGTCATCCAAATTTTATTTTCTTATATCCAAGATTTGGAAGCTTC
>Glyma19g30880.1 sequence type=CDS gene model=Glyma19g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATGCATAGGATTCTTCAAAGGGGTCGTCGATTCTTCAATCCTCCACCGCAACTTGTTACTGCTTTCTCAGGTTCTGCTGCTTTTCACGCATTTCCCTCTCATGGGGTTGAATCTCCTCATGTTCGGGAAATTACAAACACAAGAGAAGTTAAGAATGACTTTGACAAATACCATGTAAAGGGTTTATCTCGATGCCTGAACTGGACTTCAAGGTCAAATGCCAATAGTCAAGCATCCTGCTATGTGGTAAATCGTCATTTTGCATCTGATTGCAATGATATATGCTCAAAGGAGTTCTCAAGTAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAA >Glyma19g30880.2 sequence type=CDS gene model=Glyma19g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGCGTTTGATTCCACTGTTCAATCGGGTTTTGGTGGAGAAAATCGTGCCTCCATCGAAGATCACCACTGGCATTTTGTTACCCGAGAAATCCACCAAGCTTCTTACAAGTATTCCAGACTATGTAAAGATAGTGGAAGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGCCATTATTCCTACTAATGTAAAAGTTGAGTTAATAAAACTGCTAGTTTCTTCTGGGTTGTCAGTTGTTGAGGCGACAAGTTTTGTCTCACCAAAATGGGTACCCCAGTTGGCAGATGCAAAGGATGTACTGGCAGCAATTCAAAATGTTGAAGGTGCTAGGTTTCCTGTCTTGACTCCAAACCTTAAAGGCTTTGAGGCAGCTGTTGCTGCTGGAGCTAAAGAAGTGGCTGTTTTTCCTGCAGCTTCTGAATCATTCTCAAAAGCAAATCTGAATTCTAGCATTGAGGATAATCTTGCTCGTTGCCACGATATTGCTTCAGCTGCTAGAAGCCTCTCGATCCCAGTTCGTGGATATATATCATGTGTTGTCGGATGTCCTCTGGAAGGAAATATTGCTCCAGCAAAAGTTGCATATGTGGCAAAATCGCTTTATGAGATGGGTTGCTCAGAGATTTCACTGGGGGATACAATCGGTGTTGGCACACCTGGTACTGTCATTTCAATGCTTGAAGCTGTTCTTGATGTTGTTCCAACTGACATGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATATTTTAATTTCACTTCAGATGGGGATCAGCACAGTGGATTCATCTGTTTCTGGTCTTGGAGGTTGTCCATATGCCAAGGGTGCAACTGGGAATGTAGCCACTGAGGATGTCGTTTACATGCTGAATGGACTTGGAGTGAAAACAAATGTGGACCTTGGAAAGCTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCAGCTACTGCTTTGAGTAAAGTTACAAGTCATGCCTCCAAACTATAA
>Glyma19g30880.1 sequence type=predicted peptide gene model=Glyma19g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMHRILQRGRRFFNPPPQLVTAFSGSAAFHAFPSHGVESPHVREITNTREVKNDFDKYHVKGLSRCLNWTSRSNANSQASCYVVNRHFASDCNDICSKEFSSKLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALSKVTSHASKL* >Glyma19g30880.2 sequence type=predicted peptide gene model=Glyma19g30880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKRLIPLFNRVLVEKIVPPSKITTGILLPEKSTKLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGNIAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALSKVTSHASKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
