SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14980 | AT | Annotation by Michelle Graham. TAIR10: chaperonin 10 | chr1:5165930-5166654 REVERSE LENGTH=98 | SoyBase | E_val: 2.00E-50 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| KOG1641 | KOG | Mitochondrial chaperonin | JGI | ISS | |
| PTHR10772 | Panther | GROES CHAPERONIN | JGI | ISS | |
| PF00166 | PFAM | Chaperonin 10 Kd subunit | JGI | ISS | |
| UniRef100_A3FPF3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Small molecular heat shock protein 10 n=1 Tax=Nelumbo nucifera RepID=A3FPF3_NELNU | SoyBase | E_val: 8.00E-52 | ISS |
| UniRef100_C6TFY7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFY7_SOYBN | SoyBase | E_val: 9.00E-62 | ISS |
|
Glyma19g30860 not represented in the dataset |
Glyma19g30860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g28120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g128300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30860.1 sequence type=CDS gene model=Glyma19g30860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGCGTTTGATTCCTCTGTTCAATCGGGTTTTGGTGGAGAAAATCGTGCCTCCATCGAAGACCACCGCTGGCATTTTGTTACCCGAGAAATCCACCAAGCTGAATTCCGGAAAAGTTATTGCTGTTGGCCCTGGCTTTCACAGTAAGGATGGGAAGCTAATTCCTGTGGCTGTAAAGGAAGGTGACACTGTTCTTTTGCCTGAATATGGGGGAACTGAGGTGAAGCTTGATAACAAAGAGTATCATCTGTTTAGAGACGATGATATACTGGGGACATTGCATGATTGA
>Glyma19g30860.1 sequence type=predicted peptide gene model=Glyma19g30860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKRLIPLFNRVLVEKIVPPSKTTAGILLPEKSTKLNSGKVIAVGPGFHSKDGKLIPVAVKEGDTVLLPEYGGTEVKLDNKEYHLFRDDDILGTLHD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
