SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06150 | AT | Annotation by Michelle Graham. TAIR10: Cyclin family protein | chr5:1859542-1861570 REVERSE LENGTH=445 | SoyBase | E_val: 4.00E-107 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016538 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0653 | KOG | Cyclin B and related kinase-activating proteins | JGI | ISS | |
| PTHR10177 | Panther | CYCLINS | JGI | ISS | |
| PTHR10177:SF24 | Panther | G2/MITOTIC-SPECIFIC CYCLIN B | JGI | ISS | |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | ISS | |
| PF02984 | PFAM | Cyclin, C-terminal domain | JGI | ISS | |
| UniRef100_I1N8P2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8P2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P25011 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: G2/mitotic-specific cyclin S13-6 n=1 Tax=Glycine max RepID=CCNB1_SOYBN | SoyBase | E_val: 9.00E-175 | ISS |
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Glyma19g30735 not represented in the dataset |
Glyma19g30735 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g127300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30735.1 sequence type=CDS gene model=Glyma19g30735 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAAGACCCATCGTTCAACAAGAAGCTAGAGTGATATATTTTTATGATCCTTTGAGGATTTTTGGTGCCAAACTACTTGGTAATGCACCAGCACCAGCAACTGCTGAAAATAACAAGAAACAAGCTTGTGCTAATGTGGCTGGTTCTCCTACTGTTGCTAATGGAGGAGTTGTGGTGGCCAAAAGAATGGCCCCCAAACCTGATCAGAAGAAAGTGGTCCTAAAACCTAAACCCAAAAAAGTCATTGACATCAAAGCTAGTCCAAACAAGAAGGAGGTCCTGAAAGACAAGAAGAAGGAAGGAGATTCCAACTTCAAGAAGAAATCACATCACACTCTTACTTTAGTGTTCACCACTAGAAGCAAGGCAACATGGGGCATAACTAACAAGTTGAAGGAGCGGATTATTGATATTGATTCCGATGATGTTGACGATGAGCTTGTTGTTGTGGAGTGTATTGATGACATTTACAAAGCTATACTGTTTGATTGGTTGATACTAGTCCACACCAAGTTTAACCTTTTACTTGAGACCCTTTACTTGACAATCAATATAGTTGATCGGTTCCTGGCAGTTAAGAATGTTCCAAAGAGGGAATTGCAATTGATTGACATCAGTGCCCTGCTGATGGCAACCAAGTATGAAGAAATCTATCCCCCTCAGGTATTTGGTAACTTTGTATGTCTCTCAGATAGGGCTTACACTCATGAACAAATACTGGTTATGGAGAAAATCATACTGGCCAAGCTGGAATGGACTTTGACTATGCCAATACCTTTGGTTTTCCTACTTCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTAGAAAACATGGCCCATTTTTTGTCTGAGTTGGGAATGATGCACTATGCCACCATAAAGTACTTTCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCGCTCTGAATAAGGCTCCCCTTTGGAATGAGACACTTAAACTGCACAGTGGTTATTCACAAGAACAACTTATGGATTGTGCTAGATTATTGGTGAGTTTCCACTCTACGGTTGCGAATAGAGAGGAGAAGGTTGTGTACTTAAAGTATTCTGATCCTGAGAAAGGAGTTGTTGCTATGCTTCCACCAGCTAAAAATCTTCTGCCCGAAGCCATAGACCATAGTTTACAAATCTGA
>Glyma19g30735.1 sequence type=predicted peptide gene model=Glyma19g30735 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRPIVQQEARVIYFYDPLRIFGAKLLGNAPAPATAENNKKQACANVAGSPTVANGGVVVAKRMAPKPDQKKVVLKPKPKKVIDIKASPNKKEVLKDKKKEGDSNFKKKSHHTLTLVFTTRSKATWGITNKLKERIIDIDSDDVDDELVVVECIDDIYKAILFDWLILVHTKFNLLLETLYLTINIVDRFLAVKNVPKRELQLIDISALLMATKYEEIYPPQVFGNFVCLSDRAYTHEQILVMEKIILAKLEWTLTMPIPLVFLLRFIKASVPDQELENMAHFLSELGMMHYATIKYFPSMVAASAVFAARCALNKAPLWNETLKLHSGYSQEQLMDCARLLVSFHSTVANREEKVVYLKYSDPEKGVVAMLPPAKNLLPEAIDHSLQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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