Glyma19g30710 - SoyBase

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Report for Sequence Feature Glyma19g30710

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38357510
stop:	38364015
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56690	AT	Annotation by Michelle Graham. TAIR10: Cam interacting protein 111 \| chr3:20993869-20998531 REVERSE LENGTH=1022	SoyBase	E_val: 8.00E-123	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR23077	Panther	AAA-FAMILY ATPASE	JGI		ISS
PTHR23077:SF15	Panther	CALMODULIN-BINDING PROTEIN	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_G7L5U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AAA family ATPase CDC48 subfamily n=1 Tax=Medicago truncatula RepID=G7L5U3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8P0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8P0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30710

Paralog	Evidence	Comments
Glyma03g27900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g127100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30710

Limit To All Plant Sequences

>Glyma19g30710.3   sequence type=transcript   gene model=Glyma19g30710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAGCTTTTGCAGCAGTCATCATTGTCCTCCAATGCCGCCACCACGCCTTCCAAAACGCTCCAACCTTCTGAACTTGCCTCCTTGTGCGAAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTAAATCCGCGTTCATCGCCGAACTCGCCCAGGTCGACGACACTGTTCCCGTTTCTAACAGAATTTGGCTCTCCGCACCTTCCATGCTCTCCCTCTCTCTCCCCCCCGGTTCCACAGTCTCGGTGTCTATTCCATCTTCGGGGGAGAAAATTTCGCAATTGCATAGCTTTCCTCTCGCATCGTTAGCTAATGAATGTGAAAAACTCTATGGATTGGAAAGTAGCAAGGCGTTGGATGATTATGCGGGAAACTACTTGGTACTTGCAACCGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATCATGCCATGGGATGTCCTGCTTTGGGCACAAGTGTGTTTGTTCATCCAATATCTAGTGCTGCAAATGGGATCAATGAACAACATTCTACAGGAAATAGTTGTCTGTCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGTCTACCATTGAAATTTAATAACTTTCCCTCATTGGGTGTGTCTAAGGTGAAATTTCATGTCCAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCGAATGGATCAAAGTTTTCTAATGCTTGTGGGATGTCTTCTCCACTGTTTGACAATTCAGCATCTAGTCTGCCAAATCAGAATAGTCAATCATTGAATTCATTTGATGTTAGCTTAGCATTAGGGAATGAAAGTTCTAAAGAATTACTACTGACGGGGAATCTTGTCAATGTCCCAATGTTATCAGAGTTGTGCTTTTTCCAAGTTATAGGTGCTATGAAGCAGCCAGTTACCAAATCTGATCATTATCCATCAAATGGAAACGGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGGAAATCAGGCTTTCACTGTTAATGATGAAACAAAGGTGTTTTTATCTCTGCCATCAAATGCCGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAAAGCAAAGTTGCTAATGCTAGCTTACATGATAAAATCTCTAAATTGGGTGTGAGCGATGCTTTGTCAAGTTTTGGTTTAAGAACCACGAGAGGTGTTCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGAAGTTGGAGTCAAAATTTTCCCAATAAATGGACCTGAAATTGTTACCCATTATTATGGGGAAAGTGAGCAACAATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTAAATCTGATGGATGGAATTAGTAGAAGTGAAGGGTTACTTGTAATTGCCGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCAGGAAGATTTGACAAGGAAATTGAAATTGATATGTCAGTGGCCTCCAGTCGTGTGTTACCTTCCTCCAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATAGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATACATCTGTGTAAAATCCCGTGTGATTCTGATGTTAGCCTTAAAGAACTTGCTCGACTCACAGATGGTTGTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGTTTGTCTGTCAACATGACTTCTGATGGATGTGTTGTCACTTGTCACAGAGTAAAATTTCTTGTGATATTATGTTACCAGGAGAGACTTGATGCTTCAGTTATAACAATGGAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTTCACTCCTACCCAAAGCTGTCAACAAAATTTCAAAGGGCAGTCCACTGCTGTGATATAAAGGATGAATTCAATGATATGCAGTGCGACAGTAGATCTACTCAGTTCAACATTTGGAAGTTCATAAAATCTTGCACATCGTTCCTCTATCAGATTCCATTTGTCATCTTTAATTTGAGAACTGCTCAAAGTAGTTAACCACAGTCCTCAGAGAAACTATTATGTGTGTCGTATTCCAGTGACTGGGCTCATGTGCATTACATGGGATCATCTGCACTGCAAACTGGCTAGATTGAACCTTTATTTAAAATGAGTGCAGTATCTATGAAGCACCAGTAATGGGGATCAATGTCTTCACCAACAGAGGAGTTAACTAAGAGAAAAAAGTGTAATTGCCAAAATTTGTGCTGAAAACCCCCCTGACTGAATCATGATTAGCCTTTCCATTGGAAGATGAACATAATTTGAGAATGATTACAAACGTGGTCTCACGTGGAAGTTTTGCTTGCTTGTTACTTTTGAAGGTGTGAGAGGTAGCAATGTTGTATGAGGAACTCGGCCACTCATACCTGTGCGTCATTCTCAACGTGCCAATTTTCTGTAGGCCTCGACCACACTAGTTTGTACACAAAATCATAAGTTATCAAGTTTGTTGATAAAACTTACGTACCGTGAGGAATATTACAGTATATTAGCTGAGAGCAATGCATATACAGATTACAAATGTTTTGGCAAATTCAATGCGTTATGTTGTACTCCTTGAGTATTTTGAAACACTCAACTTGTAAAGTCCCAGAAATTGTAGAAGAAATTTATTGAGTAGTTACTGCACTATTGACACATCATTAGATTATTATTATTAGTCTACCTTTGTTGGATGGTTGCATTTGGCTCAATGAATTTACTTATTGAAATGTACAAGTAATTTCTTTTCTTACATTTTTTTAAGAAAATCTATTTCTTCCC

Coding sequences of Glyma19g30710

Limit To All Plant Sequences

>Glyma19g30710.1   sequence type=CDS   gene model=Glyma19g30710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAGCTTTTGCAGCAGTCATCATTGTCCTCCAATGCCGCCACCACGCCTTCCAAAACGCTCCAACCTTCTGAACTTGCCTCCTTGTGCGAAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTAAATCCGCGTTCATCGCCGAACTCGCCCAGGTCGACGACACTGTTCCCGTTTCTAACAGAATTTGGCTCTCCGCACCTTCCATGCTCTCCCTCTCTCTCCCCCCCGGTTCCACAGTCTCGGTGTCTATTCCATCTTCGGGGGAGAAAATTTCGCAATTGCATAGCTTTCCTCTCGCATCGTTAGCTAATGAATGTGAAAAACTCTATGGATTGGAAAGTAGCAAGGCGTTGGATGATTATGCGGGAAACTACTTGGTACTTGCAACCGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATCATGCCATGGGATGTCCTGCTTTGGGCACAAGTGTGTTTGTTCATCCAATATCTAGTGCTGCAAATGGGATCAATGAACAACATTCTACAGGAAATAGTTGTCTGTCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGTCTACCATTGAAATTTAATAACTTTCCCTCATTGGGTGTGTCTAAGGTGAAATTTCATGTCCAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCGAATGGATCAAAGTTTTCTAATGCTTGTGGGATGTCTTCTCCACTGTTTGACAATTCAGCATCTAGTCTGCCAAATCAGAATAGTCAATCATTGAATTCATTTGATGTTAGCTTAGCATTAGGGAATGAAAGTTCTAAAGAATTACTACTGACGGGGAATCTTGTCAATGTCCCAATGTTATCAGAGTTGTGCTTTTTCCAAGTTATAGGTGCTATGAAGCAGCCAGTTACCAAATCTGATCATTATCCATCAAATGGAAACGGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGGAAATCAGGCTTTCACTGTTAATGATGAAACAAAGGTGTTTTTATCTCTGCCATCAAATGCCGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAAAGCAAAGTTGCTAATGCTAGCTTACATGATAAAATCTCTAAATTGGGTGTGAGCGATGCTTTGTCAAGTTTTGGTTTAAGAACCACGAGAGGTGTTCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGAAGTTGGAGTCAAAATTTTCCCAATAAATGGACCTGAAATTGTTACCCATTATTATGGGGAAAGTGAGCAACAATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTAAATCTGATGGATGGAATTAGTAGAAGTGAAGGGTTACTTGTAATTGCCGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCAGGAAGATTTGACAAGGAAATTGAAATTGATATGTCAGTGGCCTCCAGTCGTGTGTTACCTTCCTCCAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATAGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATACATCTGTGTAAAATCCCGTGTGATTCTGATGTTAGCCTTAAAGAACTTGCTCGACTCACAGATGGTTGTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGACTTGATGCTTCAGTTATAACAATGGAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTTCACTCCTACCCAAAGCTGTCAACAAAATTTCAAAGGGCAGTCCACTGCTGTGATATAAAGGATGAATTCAATGATATGCAGTGCGACAGTAGATCTACTCAGTTCAACATTTGGAAGTTCATAAAATCTTGCACATCGTTCCTCTATCAGATTCCATTTGTCATCTTTAATTTGAGAACTGCTCAAAGTAGTTAA

>Glyma19g30710.3   sequence type=CDS   gene model=Glyma19g30710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAGCTTTTGCAGCAGTCATCATTGTCCTCCAATGCCGCCACCACGCCTTCCAAAACGCTCCAACCTTCTGAACTTGCCTCCTTGTGCGAAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTAAATCCGCGTTCATCGCCGAACTCGCCCAGGTCGACGACACTGTTCCCGTTTCTAACAGAATTTGGCTCTCCGCACCTTCCATGCTCTCCCTCTCTCTCCCCCCCGGTTCCACAGTCTCGGTGTCTATTCCATCTTCGGGGGAGAAAATTTCGCAATTGCATAGCTTTCCTCTCGCATCGTTAGCTAATGAATGTGAAAAACTCTATGGATTGGAAAGTAGCAAGGCGTTGGATGATTATGCGGGAAACTACTTGGTACTTGCAACCGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATCATGCCATGGGATGTCCTGCTTTGGGCACAAGTGTGTTTGTTCATCCAATATCTAGTGCTGCAAATGGGATCAATGAACAACATTCTACAGGAAATAGTTGTCTGTCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGTCTACCATTGAAATTTAATAACTTTCCCTCATTGGGTGTGTCTAAGGTGAAATTTCATGTCCAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCGAATGGATCAAAGTTTTCTAATGCTTGTGGGATGTCTTCTCCACTGTTTGACAATTCAGCATCTAGTCTGCCAAATCAGAATAGTCAATCATTGAATTCATTTGATGTTAGCTTAGCATTAGGGAATGAAAGTTCTAAAGAATTACTACTGACGGGGAATCTTGTCAATGTCCCAATGTTATCAGAGTTGTGCTTTTTCCAAGTTATAGGTGCTATGAAGCAGCCAGTTACCAAATCTGATCATTATCCATCAAATGGAAACGGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGGAAATCAGGCTTTCACTGTTAATGATGAAACAAAGGTGTTTTTATCTCTGCCATCAAATGCCGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAAAGCAAAGTTGCTAATGCTAGCTTACATGATAAAATCTCTAAATTGGGTGTGAGCGATGCTTTGTCAAGTTTTGGTTTAAGAACCACGAGAGGTGTTCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGAAGTTGGAGTCAAAATTTTCCCAATAAATGGACCTGAAATTGTTACCCATTATTATGGGGAAAGTGAGCAACAATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTAAATCTGATGGATGGAATTAGTAGAAGTGAAGGGTTACTTGTAATTGCCGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCAGGAAGATTTGACAAGGAAATTGAAATTGATATGTCAGTGGCCTCCAGTCGTGTGTTACCTTCCTCCAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATAGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATACATCTGTGTAAAATCCCGTGTGATTCTGATGTTAGCCTTAAAGAACTTGCTCGACTCACAGATGGTTGTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGTTTGTCTGTCAACATGA

Predicted protein sequences of Glyma19g30710

Limit To All Plant Sequences

>Glyma19g30710.1   sequence type=predicted peptide   gene model=Glyma19g30710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSNSKQKKKQSKLLQQSSLSSNAATTPSKTLQPSELASLCEEASRKFPSLIAKSAFIAELAQVDDTVPVSNRIWLSAPSMLSLSLPPGSTVSVSIPSSGEKISQLHSFPLASLANECEKLYGLESSKALDDYAGNYLVLATVFPSSKVLKNGVRLSSNLYHAMGCPALGTSVFVHPISSAANGINEQHSTGNSCLSIYNCKELYLQLVPSKNGLPLKFNNFPSLGVSKVKFHVQSENDIVASPATPSNGSKFSNACGMSSPLFDNSASSLPNQNSQSLNSFDVSLALGNESSKELLLTGNLVNVPMLSELCFFQVIGAMKQPVTKSDHYPSNGNGDLYPEDSDIADSGNQAFTVNDETKVFLSLPSNAASEEPIQRDIPCVKLESKVANASLHDKISKLGVSDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHEVGVKIFPINGPEIVTHYYGESEQQLHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRSEGLLVIAATNRPDHIEPALRRPGRFDKEIEIDMSVASSRVLPSSSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLCKIPCDSDVSLKELARLTDGCTGADISLICREAAVAAIEERLDASVITMEHLKMAIKQIQPSEVHSYPKLSTKFQRAVHCCDIKDEFNDMQCDSRSTQFNIWKFIKSCTSFLYQIPFVIFNLRTAQSS*

>Glyma19g30710.3   sequence type=predicted peptide   gene model=Glyma19g30710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSNSKQKKKQSKLLQQSSLSSNAATTPSKTLQPSELASLCEEASRKFPSLIAKSAFIAELAQVDDTVPVSNRIWLSAPSMLSLSLPPGSTVSVSIPSSGEKISQLHSFPLASLANECEKLYGLESSKALDDYAGNYLVLATVFPSSKVLKNGVRLSSNLYHAMGCPALGTSVFVHPISSAANGINEQHSTGNSCLSIYNCKELYLQLVPSKNGLPLKFNNFPSLGVSKVKFHVQSENDIVASPATPSNGSKFSNACGMSSPLFDNSASSLPNQNSQSLNSFDVSLALGNESSKELLLTGNLVNVPMLSELCFFQVIGAMKQPVTKSDHYPSNGNGDLYPEDSDIADSGNQAFTVNDETKVFLSLPSNAASEEPIQRDIPCVKLESKVANASLHDKISKLGVSDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHEVGVKIFPINGPEIVTHYYGESEQQLHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRSEGLLVIAATNRPDHIEPALRRPGRFDKEIEIDMSVASSRVLPSSSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLCKIPCDSDVSLKELARLTDGCTGADISLICREAAVAAIEVCLST*

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