Glyma19g30681 - SoyBase

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Report for Sequence Feature Glyma19g30681

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38333124
stop:	38336611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30681

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40950	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr2:17087823-17090326 REVERSE LENGTH=721	SoyBase	E_val: 6.00E-143	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF22	Panther		JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_A2Q6G9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CAMP response element binding (CREB) protein n=1 Tax=Medicago truncatula RepID=A2Q6G9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8N6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8N6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30681

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30681 not represented in the dataset	Glyma19g30681 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30681

Paralog	Evidence	Comments
Glyma03g27865	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30681 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g126800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30681

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30681

Limit To All Plant Sequences

>Glyma19g30681.1   sequence type=CDS   gene model=Glyma19g30681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCAAATAACTAACGAAACCCCAAAAATTTCCAAAACCATATCTCAGAAACCCTCACCAATGACTGCGTCAATGCCCGCCGTGGAGCCGTCACCGGAGCCTCCAGCGTCTGATCTCGTGTTTGGCGACTTCTCCTCCAACTTCAACGCCTTCCTCATCCCCTCCATGGACTCGCTCTTCAACACCACTGACGCGCTCCCCTTCGCCTCCGATCTCGAATTCGGCATGGATTTCGACAACAACGGGGAATTCGAAATCACCTTCGACGACCTCGACGAACTCGACGACATCTTCATCCCCTCCGACGCCGAGGATTTCCTCCTCCCCGACGTCTGTAACTCTAATTATGACTCCGCTTCGCCGCCGATCGACGCAAAGAATTCCGATTCGCCGGATTCCGACGTGTCCGCGGTTTCCGGCGAGGGCGATTCCGCGGATAATGTTAGGGTTTCGAGCGTTCCGTCGCCGGAGGCTGAGTTTTGCGACCGGGAGGAGTCTTCTAACGGACCGGTTTCGTCGCAGGGTTCCGGCAACGGCGGATCGGGTGTATACGAGGCCATGCACTCGCCCTCACCTGATTCCGGCCCTTACGAGAGGGACATAACATCGTCTCATGCGCATGCAGTTACAAACAATGGTGTGAAAATGGAGGAAACTCCAGCTTTTGATCTGAAGAGAAAGAAAGAAAGTTGCGATGGAAGTGCTACCAAGCACAGAAGGTTCTCTTCCTCGGTGGAGAATAATAATAATAACACCGAGAAACAGTCTCAGTCTGGTTTGAATGGAATTGACGATGAGGATGAGAAAAGGAAGGCGAGGTTGATGAGGAACAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAGGAGCTTGAGGAGAAAGTGAGATCATTGAATTCCATCATTGCTGATATGAGTAGTAAGATGTCGTATGTGGTGGCTGAGAATGCTACACTTAGACAGCAAGTGGGTGCTGCTGGTGTCATGTGTCCTCCTCCTCCAGCACCTGCTCCTGGGATGTACCCTCATCATCCTCCAATGGCACCTATGCCTTATCCGTGGATGCCTTGTGCTCCTTATGTTGTTAAGCCTCAAGGGTCTCAGGTTCCTTTGGTTCCCATTCCTAGGTTGAAGCCTCAGCAACCTGCTTCAGCCCCCAAGGGTAAAAAGAGTGAGAACAAGAAGAGTGAGGGGAAAACTACGAAGGTTGCTAGCATTAGTTTGCTGGGTTTGTTTTTCTTTATCATGCTTTTCGGTGGGCTTGTTCCTCTTGTTGATTTTAGGTTTGGGGGTTTAGTGGAGAATGTTCCTGGTACTGGTAGGTCTAATTATGTTAGTGATAGGGTGTATGGTCAAGGTGGAGGGAAGGTTTGGTCTTTGAATGGTCGTAGGAATGGGTCTGAAAGAGATGAGGATGTAGGGTTTTCTAATGGTGGGAGGTTTAGTGTTTCTGACAGAGTGAATTATGAGCGAGGCCGGAATTTTAGAGAAGAAAGGCATGATCGTCGGAAAGGCTCGGATGATTTCGGTCGTCAGGGCAATGCCAGTGAGCCTCTTGTTGCTTCTCTGTATGTACCTAGGAATGATAAGATGGTGAAGATTGATGGGAACTTGATTATCCATTCCATTATGGCCAGTGAGAAAGCCATGGCATCTCAAACTGCCGAGGCAAAGAAGGACAAGAGAGAAACTGGGTTGGCCATTCCTAAGGATTTGGATTCTGCACTGGCTATTCCTGGAGTTGGAAGAAGCAGAGGTCAACATCCACATGTGTATAGTGTTTCTCCTGAACAGAGGAAGGCTCTTGGCTCTGGTTCAACCAAAGTTTTGAAGGACCATATGAAGTCCTCTGTAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTCGTAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTTCTCCAAGTCCTGGAGCAATAGTTCCTGCAACATCAGTAGCCAATGTTTCCACTGAAAACCGTCAGAATGCTACCAGTGTCAAAAAGACCAGGAATAGAAGAACCCTTCATGAGCTCCCAGAGCCGCTTAATGGATCTAGTCTGAACATAACTGAAGAACGAGTAAAGAATTTGCAGAAAGACCACCTCCATGGTAATAAGTCTTCTATGGTAGTTTCAGTCCTTGTTGATCCCAAAGAGGCTGGCGATGGTGATGTTGATGTTGACGGCATGATGAGACCAAAGTCACTCTCTCGGATTTTTGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCTTGTGGTCTGCCTCGTGCTTCTCCCCATTTGGTGACTGGTTACGTATGA

Predicted protein sequences of Glyma19g30681

Limit To All Plant Sequences

>Glyma19g30681.1   sequence type=predicted peptide   gene model=Glyma19g30681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQITNETPKISKTISQKPSPMTASMPAVEPSPEPPASDLVFGDFSSNFNAFLIPSMDSLFNTTDALPFASDLEFGMDFDNNGEFEITFDDLDELDDIFIPSDAEDFLLPDVCNSNYDSASPPIDAKNSDSPDSDVSAVSGEGDSADNVRVSSVPSPEAEFCDREESSNGPVSSQGSGNGGSGVYEAMHSPSPDSGPYERDITSSHAHAVTNNGVKMEETPAFDLKRKKESCDGSATKHRRFSSSVENNNNNTEKQSQSGLNGIDDEDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSLNSIIADMSSKMSYVVAENATLRQQVGAAGVMCPPPPAPAPGMYPHHPPMAPMPYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQPASAPKGKKSENKKSEGKTTKVASISLLGLFFFIMLFGGLVPLVDFRFGGLVENVPGTGRSNYVSDRVYGQGGGKVWSLNGRRNGSERDEDVGFSNGGRFSVSDRVNYERGRNFREERHDRRKGSDDFGRQGNASEPLVASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTAEAKKDKRETGLAIPKDLDSALAIPGVGRSRGQHPHVYSVSPEQRKALGSGSTKVLKDHMKSSVTDGKMQQWFREGLVGPMLSSGMCTEVFQFDVSPSPGAIVPATSVANVSTENRQNATSVKKTRNRRTLHELPEPLNGSSLNITEERVKNLQKDHLHGNKSSMVVSVLVDPKEAGDGDVDVDGMMRPKSLSRIFVVVLIDSVKYVTYSCGLPRASPHLVTGYV*

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