Glyma19g30670 - SoyBase

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Report for Sequence Feature Glyma19g30670

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38321494
stop:	38326364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56650	AT	Annotation by Michelle Graham. TAIR10: Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein \| chr3:20984807-20985913 FORWARD LENGTH=262	SoyBase	E_val: 1.00E-126	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009523	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem II	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009654	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: oxygen evolving complex	SoyBase	N/A	ISS
GO:0019898	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF01789	PFAM	PsbP	JGI		ISS
UniRef100_A2Q6H0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PsbP domain-containing protein n=1 Tax=Medicago truncatula RepID=A2Q6H0_MEDTR	SoyBase	E_val: 2.00E-140	ISS
UniRef100_I1N8N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30670

Paralog	Evidence	Comments
Glyma03g27850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g126700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30670

Limit To All Plant Sequences

>Glyma19g30670.2   sequence type=transcript   gene model=Glyma19g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAGTATGAAGTGTAGCAACTAAGACGTGTGATCCTGGTGTATCCACAATGGATAAGAAACAGAGTGACTAAGATTCTAACATCAACCTTAAACCTTGTCCTTCATATTACACACATTTCACCAACATTAATTCCCCCAATCTGAAATGTCAACCTTTGCATTCACTTCTTTATTCCAAATCACAGTCTCATCTTCATCTTCATCTTTGCATGCTATCAGAGCCTCAGCTTCTGAGTATGTTCCCTCCCAACACACCCTTAGAAGGGAATTCTTGAAGGGTGTTGCTGCTTTGATGCCTCTTCCACTTGTTGTGCTGATAGAGCCACCCCCTTCAGATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCTTCACCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCTCTGCCAAGGACACTCCAGCCCTTCGTGCAGTTCTTTGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACGTGGAAACAGGCTCGTGTAGCAAATATACTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTAGTGGCTTCGCCCTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGACATTGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGACCATTTGTCACTGGAAACACTTTTGATCCAGAAGAGCTCCTTGAGACTTCAGTTGAAAAGCTTGGTGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGCACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAAGCCGTGCTTAATTCCTTTGAAGTTTAGTTTTCTGTCAAAGGTAAATAAGAGAAGTTTATTTCTTTCTAGTTTTTGTTTATACAAAATTACTCAGAAAGAATTGCATTGGCCACCATTTCAATTTTTTGTGTTCCGAGGTTAAACTTTAACTTTTAACAGTCTGGCATTTTTCTTCTTAGTATATACCTAATTGAGTGAATGACATATGTATTGATTATCTTTATTTTATCTTTGTAACCAAAAAGTAAAATTAACGGAAAAAAAAAAGTTAAATAAGAAGAAGAAGAAGAAGAAAATAAAGAGTAGCTGATTCATTAACTTGATTTGCAATATACTCTGATTCAGTTGTAGATAGAGCTACCACAGGCTGTAAGTTTTCTTTCCAGCAACTAGCAGTGCCAAACAATGTAAATACATATCCAGATAAGGACTTCCTAGTAATCCACATTCCCTGCATAGTCTGCGTACCACATAACCCCATAATAGCATCTCCTTGAGCTGCCTTCTTGTACTTCATATCAGATACCAGAGATCCATTCACATACCTCAATACCCACTTCAAAGCCTCCCAATGAGCTTGACATGGATCTGCCATAAACCTGCTTACAATGCTAACAGCATGGGCCAAGTTTGGCCTACTACAGACCATACCATACATGATGCTTCCTACTCCACTAGCATATGGAATAGTATCCATCTTCCTCCTTTCCTCTTCAGTATTAGGAGCTTGAGTAATTGAGAGTTTAGTGTGATGTCCCAAAGGTGTGCTTACAGGTTTAGATTGATGCATCCTAAACCTTTCCACTACCTTCTTCAAATAGCCTTGTTGAGATAAGAACAATTCTCCCTTCATCTGATTTCTTACAATATCCATCCCAAGAATTCTCCTTGCAATATCAAGATCCTTTATCTCAAATTCCGAACTTAACCTCTCCTTAAGCGTACTAATCTCATCCTTGCTTGAGCTATCTATAAGAATATCATCTACATACAGGAGCTAGAAAAGGACACATTTTTCTTCTCTTCTCAAGATGTAGACACAACTATCATAACTACTCCTTAGAAAACCTATCCTAGAATGAAAGTCATCAAACTACTTGTACCACTGACACAGGCTCTGTTTCAAGCCATACAGTGATTTCTTCAAGAGACATACCTTAGTATGATCTTCTACAAACCCGAAATCGTTGTTTCCAGAAAACTTCTCGATATTGTACTTGGTACCCATGGTTTATCTTTCTTGATTTCTTGATTCCTTTTCTTTCTCCCCAGAGACAGCCCCACTTGTTGGTTCTAATTACCAATAAGCAGAAAGAAATAGAAACTACCAAGAAACCATGAACATTCAACAAGAAACACAAAACCCAAAAGCAAGAATGTAAAACGAGAACACAATGCAATTATGTGGTTCAGCCAATATCACCTACATCCACGAGAATAACAACTCCATTCTGAAACTAAAATCAACGAGATACAACAGAGAACCCCGTTGGTTCTACCCTTACATTTAAGAAGAACTCTCAACAGGAACACAAGCCTCACTCTGTTTCTCTCTTCGTACCCAGTGTTTTCTCTCTTATGTTTCTCACAGCAATCACATTGCCTCTCACACTGAATACAGTTAGTTACTCTTAAACAAAGATCCCATGCCCTATATTTATAGGCCCCAAGTCACTAAGAATCAACAACATAAGCCTAACATAAAACACTCAACAGTTTGATGCGTATCAGATTAATGAAACAAACTGTTCTGTCTGAGTGAGCATCAGATTGAGTCAGTCTGATTACAACAGACGATTCTCATCAGACCGAATGTCCATCAAATTGAACAACAGATTTTGAGTCACAGACAACACTATATCATTTGCCTGAATGTCTTTTTTCATATTATCCTCACAATTATTCTTGATGTTTTTACTTTTCAGTGTTAATGAGCTCTACAACTTTCTTATCACGTAATTGTACAAAATTGAAATTTCAATGGCCTCAACATAAGTGTTCCCTTTACCTTGATCATATAAGGTGTAATTTTTAATGCATTTTTTTTTCATCAAAATATACTGACTTGGACTGTTGGATCTAAAATACATTATTTCTTATCACGTAATTGT

Coding sequences of Glyma19g30670

Limit To All Plant Sequences

>Glyma19g30670.1   sequence type=CDS   gene model=Glyma19g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTTTGCATTCACTTCTTTATTCCAAATCACAGTCTCATCTTCATCTTCATCTTTGCATGCTATCAGAGCCTCAGCTTCTGAGTATGTTCCCTCCCAACACACCCTTAGAAGGGAATTCTTGAAGGGTGTTGCTGCTTTGATGCCTCTTCCACTTGTTGTGCTGATAGAGCCACCCCCTTCAGATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCTTCACCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCTCTGCCAAGGACACTCCAGCCCTTCGTGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACGTGGAAACAGGCTCGTGTAGCAAATATACTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTAGTGGCTTCGCCCTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGACATTGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGACCATTTGTCACTGGAAACACTTTTGATCCAGAAGAGCTCCTTGAGACTTCAGTTGAAAAGCTTGGTGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGCACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAAGCCGTGCTTAATTCCTTTGAAGTTTAG

>Glyma19g30670.2   sequence type=CDS   gene model=Glyma19g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGAGAAGTTGAGGTTGGCTCCTTCCTTCCACCTTCACCCTCTGACCCTTCTTTCGTTCTCTTCAAGGCCTCTGCCAAGGACACTCCAGCCCTTCGTGCAGTTCTTTGCAGGAAATGTGCAGCCATACAAGTTTATCCTCCCCCCGACGTGGAAACAGGCTCGTGTAGCAAATATACTATCTGGAAATTACTGCCAGCCTAAATGTGCAGAGCCCTGGGTGGAGGTTAAGTTTGAAGATGAAAAACAAGGAAAAGTTCAGGTAGTGGCTTCGCCCTTGATACGCCTTACCAACAAACCAAATGCAACAATTGAGGACATTGGGAGCCCAGAAAAACTGATTGCTTCTCTTGGACCATTTGTCACTGGAAACACTTTTGATCCAGAAGAGCTCCTTGAGACTTCAGTTGAAAAGCTTGGTGATCAGACATACTACAAATACGTGCTCGAAACACCATATGCTCTCACAGGCACACACAATCTTGCAAAAGCAACAGCAAAGGGAAACACTGTTGTTTTGTTTGTGGTTAGTGCCAATGACAAGCAGTGGCAAACTTCTGAGGAGACTCTAAAAGCCGTGCTTAATTCCTTTGAAGTTTAG

Predicted protein sequences of Glyma19g30670

Limit To All Plant Sequences

>Glyma19g30670.1   sequence type=predicted peptide   gene model=Glyma19g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTFAFTSLFQITVSSSSSSLHAIRASASEYVPSQHTLRREFLKGVAALMPLPLVVLIEPPPSDAREVEVGSFLPPSPSDPSFVLFKASAKDTPALRAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV*

>Glyma19g30670.2   sequence type=predicted peptide   gene model=Glyma19g30670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEKLRLAPSFHLHPLTLLSFSSRPLPRTLQPFVQFFAGNVQPYKFILPPTWKQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTFDPEELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLFVVSANDKQWQTSEETLKAVLNSFEV*

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