Glyma19g30660 - SoyBase

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Report for Sequence Feature Glyma19g30660

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38306519
stop:	38311775
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68570	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:25746811-25750110 FORWARD LENGTH=596	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF56	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7L4V0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR5 n=1 Tax=Medicago truncatula RepID=G7L4V0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8N3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8N3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30660

Paralog	Evidence	Comments
Glyma03g27800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g126600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30660

Limit To All Plant Sequences

>Glyma19g30660.1   sequence type=CDS   gene model=Glyma19g30660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAGAGAAGAGCACTAAGAGCAATGCGGAAATGGGGGAGAAAGAAGAGAAGAAGAAGAAGCATCGACGAGGAGGCATCAGAACATTACCTTTCATTCTTGCAAATGAAGTGTGTGACAGATTTGCAAGTGCTGGTTTTCATGGTAACTTGATAAGTTACTTAACACAAGAGCTGAACATGCCATTGGTATCAGCCTCAAACACACTGACAAACTTTGGAGGAACATCTAGCTTCACCCCTCTCATTGGGGCAATCGTGGCAGATTCCTTTGCTGGACGCTTTTGGACCATTACTGTTGCTTCTCTCATTTATGAATTGGGATTGATTAGCATCACAGTATCAGCTATACTGCCACAATTTCGGCCCCCACCATGCCCAACACAAGTGAATTGCCAAGAAGCCACATCCTCACAACTGTGGATACTCTACATCTCCCTCCTCCTCACATCTGTTGGATCAGGTGGCATTAGACCATGTGTTGTGCCCTTTTCAGCAGACCAATTTGACATGACCAAAAGTGGTGTAGCATCAAGGAAGTGGAACCTCTTCAATTGGTACTTTTTCAGCATGGGCTTGGCTTCTCTTAGTGCTTTGACCATTGTGGTTTACATTCAAGACAACATGGGCTGGGGTTGGGGCCTTGGAATTCCATGCATTGCCATGTTGATATCCATAATTGCCTTTGTGTTGGGCTCACCACTTTATAAGACTGTGAAACCAGAAGGGAGCCCTTTGGTTCGTTTGGCCCAAGTAACCGTGGCAGCTATAAAGAAAAGGAAGGAGGCTTTGCCAGAAGATCCCCAGCTTTTGTACCATAATTGGGAACTTGATACTCCTATTTCTTTGGAAGGGAGGCTTCTACACTCTAATCAATATAAATGGTTGGACAAGGCTGCAATTGTCACAGAGGAGGAGGCGAGAGATCAAACTACAACACCAAACTTATGGAAATTAGCCACTGTCCACAGAGTTGAGGAGCTAAAATCCATCATCAGAATGCTTCCAATTTGGGCATCAGGAATTCTGCTCATAACTTCTTCATCACATCTACACAGCTTTGTGATTCAACAAGCTCGCACTATGGACCGTCACCTTTCTCCCTCGTTCCAAATTTCCCCCGCTAGCATGTCCATTTTCAGCGTGCTAACCATGATGTCAGGAGTTGTTCTATACGAACGCCTTTTCGTTCCCTTTGCGCGTAGATTCACAGGGAACCCTTCTGGAATCACATGCTTGCAAAGAATGGGAATAGGTTTCATAATTAACATCATAGCCACTGTGGTTGCTGGCCTAATGGAAATGAAAAGGAAATCATTTGCTGCCAAGTACCACTTATTGGATGATCCAAAAGCCACTATTCCTATTAGTGTGTTCTGGTTGGTACCTCAGTATTGTCTTCATGGGGTGGCTGAAATTTTCATGTCTGTTGGACATTTGGAATTTCTCTTTGAGCAGGCACCTGAAAGCATGAGAAGCAGTGCTACAGCACTGTACTGCATAACCACAGCCATTGGGAACTACATGGGTACATTGCTGGTATCATTAGTTCATAAGTATACTGGCAAGGAGAATAATTGGTTGCCAGATAGGAACCTCAATAGGGGTGGATTGGACTACTATTATTTTCTTCTTAGTGGGATTCAAGTTGTGAATCTCGTTTATTATTTGATATGTGCTTGGTTTTACACTTATAAGCCCGTGGATGAAATTAGTGAAAGGACCAAGGAAGAAGATTTGGAACAAGCCAATGAACATATCTCACCTGATGACAAGTTATTAAAGGATGGTAGGGATGAAGAAAAGAGAGAATTAACGAAAGATGAATGA

Predicted protein sequences of Glyma19g30660

Limit To All Plant Sequences

>Glyma19g30660.1   sequence type=predicted peptide   gene model=Glyma19g30660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIEKSTKSNAEMGEKEEKKKKHRRGGIRTLPFILANEVCDRFASAGFHGNLISYLTQELNMPLVSASNTLTNFGGTSSFTPLIGAIVADSFAGRFWTITVASLIYELGLISITVSAILPQFRPPPCPTQVNCQEATSSQLWILYISLLLTSVGSGGIRPCVVPFSADQFDMTKSGVASRKWNLFNWYFFSMGLASLSALTIVVYIQDNMGWGWGLGIPCIAMLISIIAFVLGSPLYKTVKPEGSPLVRLAQVTVAAIKKRKEALPEDPQLLYHNWELDTPISLEGRLLHSNQYKWLDKAAIVTEEEARDQTTTPNLWKLATVHRVEELKSIIRMLPIWASGILLITSSSHLHSFVIQQARTMDRHLSPSFQISPASMSIFSVLTMMSGVVLYERLFVPFARRFTGNPSGITCLQRMGIGFIINIIATVVAGLMEMKRKSFAAKYHLLDDPKATIPISVFWLVPQYCLHGVAEIFMSVGHLEFLFEQAPESMRSSATALYCITTAIGNYMGTLLVSLVHKYTGKENNWLPDRNLNRGGLDYYYFLLSGIQVVNLVYYLICAWFYTYKPVDEISERTKEEDLEQANEHISPDDKLLKDGRDEEKRELTKDE*

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