Glyma19g30640 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g30640

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38257992
stop:	38260727
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:2191533-2193416 REVERSE LENGTH=402	SoyBase	E_val: 1.00E-174	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_B9RU50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9RU50_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E5DE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E5DE related cluster n=1 Tax=unknown RepID=UPI000233E5DE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30640

Paralog	Evidence	Comments
Glyma03g27760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g126400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30640

Limit To All Plant Sequences

>Glyma19g30640.1   sequence type=CDS   gene model=Glyma19g30640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAGATGGGTATTGTGGGAGTTTCTTTCAGAGGTGCAAGCCTTACATAGCCATGGTTTCTCTGCAATTCGGATTTGCGGGTATGAACATAATCACTAAGGTTTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCAGCTATTGCTCCTTTTGCTATTGTTCTAGAGAGGAAAGTGAGGCCCAAGATGACATTTCTCATGTTCATGCAAATATTTGTGTTGGGTCTACTTGGGCCTGTGATTGATCAGAACTTATACTATGCCGGGCTGAAATTTACTTCCCCGACCTACTCATGTGCGATTAGCAACATTCTTCCTGCAATGACATTTGTGATGGCTGCTATTTTTAGGATGGAGAAGTTGGACATGAGAAAAGTAAGATGCCAAGCAAAGGTGATTGGAACTATTGTAACAGTTGCTGGGGCCATGTTGATGACATTGTATAAAGGGCAAGTAATCAGTTTCTTGGGGTCTAAGTACATGCATCACCCCAGAAACTATGTACCTGAAAACACCACTGATTCTGGTGAAAAGGATTGGTTTAAGGGCTCTATTCTTCTAATACTAGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGGCAATGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTGGGTACACTGCAGTCAATTGCAGTTACCTTTGTCATGGAGCACAAACCCTCTGTTTGGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGCTGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGTCCTGTTTTCGTAACTGCTTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTGCTTTCATCCTTGCAGAAAAAATATATCTCGGAGGGGTCGTTGGTGCTATTCTCATAGTAATGGGACTTTACTCCGTTCTATGGGGCAAACACAAGGAGAACAAAGAGAAAGAGGCAGAGACAACCATGGAGGTGATGAAGTGTTGTTCAGAAAATGGGAGGTTGGAGACTGTGGTAGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCGAGAGAGTTAAGGGTAGTCATTAGTGCTCCAAAAGCTTAA

Predicted protein sequences of Glyma19g30640

Limit To All Plant Sequences

>Glyma19g30640.1   sequence type=predicted peptide   gene model=Glyma19g30640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGDGYCGSFFQRCKPYIAMVSLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKVRPKMTFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMTFVMAAIFRMEKLDMRKVRCQAKVIGTIVTVAGAMLMTLYKGQVISFLGSKYMHHPRNYVPENTTDSGEKDWFKGSILLILATLSWASFFILQAMTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHKPSVWTIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVVGAILIVMGLYSVLWGKHKENKEKEAETTMEVMKCCSENGRLETVVEDAETNNDIEMQKGEASRELRVVISAPKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain