Glyma19g30590 - SoyBase

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Report for Sequence Feature Glyma19g30590

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38211775
stop:	38215566
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40850	AT	Annotation by Michelle Graham. TAIR10: phosphoinositide 4-kinase gamma 1 \| chr2:17051575-17053260 FORWARD LENGTH=561	SoyBase	E_val: 1.00E-159	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2381	KOG	Phosphatidylinositol 4-kinase	JGI		ISS
PTHR15245	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15245:SF11	Panther	gb def: T17H3.7	JGI		ISS
PF00454	PFAM	Phosphatidylinositol 3- and 4-kinase	JGI		ISS
UniRef100_B9SCE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9SCE9_RICCO	SoyBase	E_val: 3.00E-179	ISS
UniRef100_I1N8M9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N8M9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30590

Paralog	Evidence	Comments
Glyma03g27610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g125900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30590

Limit To All Plant Sequences

>Glyma19g30590.2   sequence type=CDS   gene model=Glyma19g30590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGTGAGCATTGACCAACATCATGGATTTAAGCCATTTAGCCGAACACAGAGGTGCAAGCTCCAATCCTATGGTCACCTTGATCCTAACATCATTGAACTTAGCCAAACTGGTGGTGCTCTTTCTTCTTCTTCAAACTCCTTTGGATTAGCATTTCAAGCGGAAAACATTCACCGCAGTTTCTCCACTCCATGCCTCCCCCTAACTACAATGCTAGGAGGGGAAGACTTCACGTCTTCTTCTCATCCAAGGGTTGAGATTGTTGGTGGAAGTGAAGCTCCTCCAGTGCATGCTCTAGTTGTTGAGGTTGCCATAGCCATGGCCTCAGGTGTTCATCCTATACCCCTCCCAAGTGGCCTAGGTGGTGCCTATGTTTTCCCCAACCAAAACGGTAACAACATTGCTGTAGCAAAGCCAGTGGATGAAGAGCCTTTAGCCTTGAACAACCCAAAGGGCTTAGGGGGTCAAATGCTGGGCCAACCCGGCCTAAAGAAATCGATTCGAATCGGTGAAACCGGTATCCGAGAGTTAGCTGCTTATCTTCTTGACCATGGAGGCCTTGCTGGTGTGCCTCCTACTGCTTTAGTCAAATTCTCTCATGCTGCGTTCTTTGGTGCAACGGCCACTATTTCTCACATGCCTAAAATTGCGTCACTCCAACGCTTCGTTGGTCATGATTTTGATGCAGGAGAATTGGGCCCTTCTTTCTTCCAAGTTTCTTCAGTCCACCAAATTGGGATCCTAGACATTAGGATTATGAACCTTGATAGAAATGCTGGGAATATGCTTGTGATGAAACATGACCACAACAATAGTGGCTATGTTGATGGAGTTGCTGACCTTGTTCCCATTGACCATGGTTTTTGCCTACCTGAGTGGCTGGATGATCCATATTTTGAGTGGCTGCACTGGCCACAAGCCTCTATTCCTTTCTCTGACTATGTACTTGAATACATTTCCAAACTTGATCCCTTTAGAGATGCAGAGATTTTGAGAACCAACCTTCCTTCGCTGAGGGAGTCCTCGATTCGCGTTCTTATCGCTTGCACCATTTTCTTGAAGCAAGCTGCTGCTGCAGGCCTTTGTCTTGCTCAAATAGGCCAAATGATGACTAGGGAATTTTGTGATGGTGAAGAGTCACCAAGTGAATTAGAAAATATTTGCTTGAAGGTCAAGACTACTAGCGTCCCTCGGGGTTCCGACGATAACGTGAATAACCGCAAAGATGAAACTGAAGAATGTGATGAAGTTGGTGGCATTATTTCCTTGGCCGACCTCAACCAAGGTGAATGGGAAGCGTTTTTGGAGGGTTTTAGTGAGCTTTTGCATGGATTTTTTGAGGGTAAGAGGTGCAAAAGCAAAAGTTGGAACTTAAATGGAAGTTACTGA

Predicted protein sequences of Glyma19g30590

Limit To All Plant Sequences

>Glyma19g30590.2   sequence type=predicted peptide   gene model=Glyma19g30590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVSIDQHHGFKPFSRTQRCKLQSYGHLDPNIIELSQTGGALSSSSNSFGLAFQAENIHRSFSTPCLPLTTMLGGEDFTSSSHPRVEIVGGSEAPPVHALVVEVAIAMASGVHPIPLPSGLGGAYVFPNQNGNNIAVAKPVDEEPLALNNPKGLGGQMLGQPGLKKSIRIGETGIRELAAYLLDHGGLAGVPPTALVKFSHAAFFGATATISHMPKIASLQRFVGHDFDAGELGPSFFQVSSVHQIGILDIRIMNLDRNAGNMLVMKHDHNNSGYVDGVADLVPIDHGFCLPEWLDDPYFEWLHWPQASIPFSDYVLEYISKLDPFRDAEILRTNLPSLRESSIRVLIACTIFLKQAAAAGLCLAQIGQMMTREFCDGEESPSELENICLKVKTTSVPRGSDDNVNNRKDETEECDEVGGIISLADLNQGEWEAFLEGFSELLHGFFEGKRCKSKSWNLNGSY*

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