Glyma19g30580 - SoyBase

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Report for Sequence Feature Glyma19g30580

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38197785
stop:	38210680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40840	AT	Annotation by Michelle Graham. TAIR10: disproportionating enzyme 2 \| chr2:17045368-17050779 FORWARD LENGTH=955	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000025	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose catabolic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005976	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide metabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-alpha-glucanotransferase activity	SoyBase	N/A	ISS
GO:0010297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heteropolysaccharide binding	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
GO:2001070	GO-mf	Annotation by Michelle Graham. GO Molecular Function: starch binding	SoyBase	N/A	ISS
PF00686	PFAM	Starch binding domain	JGI		ISS
PF02446	PFAM	4-alpha-glucanotransferase	JGI		ISS
UniRef100_G7L4U3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-alpha-glucanotransferase n=21 Tax=Medicago RepID=G7L4U3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E5DD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E5DD related cluster n=1 Tax=unknown RepID=UPI000233E5DD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30580

Paralog	Evidence	Comments
Glyma03g27600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g125800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30580

Limit To All Plant Sequences

>Glyma19g30580.1   sequence type=CDS   gene model=Glyma19g30580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATCCGGGATTGTTTTCTGCGAATAAGTCTACGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTCACCCAATGGGGTCAGAGCTTGCTGGTGTGTGGCTCTGTACCAGTTCTTGGTTCCTGGAATGTGAAGAAGGGTGTGTTGCTCAGCCCCGTTCATCAAGGGGCTGAGCTCATATGGGGTGGAAGTATCACTGTGCCAAAAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAACAAAAATGTACTGAGATGGGAGATGGGGAAGAAGCGTGAACTGGTACTCCGTGAAGGGATTCAGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCACTTCCTTTCAGAAGTGCTTTCAAAGATGTCATTTTTCGGCAAAGCTGGGACTTGAGCGATGCAACCGTAGGAGTAAACCACATTAATGTTGAACCGGAAGGAGAAGCTATCTTGGTCCAATTCAAAATTTCCTGCCCAAATATTGAGAAAGACACATCAATATATGTCATTGGCAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATCAAATATAGATATGGAAAATATGACAGGAGTGGGAACTTTTCTATAGAGAGTGGTCCAAATCGAGAAGTCTATGCTAACTCCCCAAGGAATGAGGCGAAATATATTTTTCTTTCAGATGGCATGATGCGGGAAATACCTTGGCGTGGTGCTGGTGTAGCAGTCCCCATGTTTTCTGTTAGGTCAGAATCTGATCTGGGTGTTGGGGAGTTTCTTGACCTTAAGTTGCTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCATTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTAAGAACATACCCGAGGAGATCAAGAAAGAGATTGAAAAGGCAAAACAGCAATTGGATGGGAAGGATGTTGATTATGAGGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCGCTCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTAAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCTTATGCTGCTTTCTGTTTCCTGCGGGACTTCTTTGAAACATCAGATCGCACTCAATGGGGTTGTTTTGCTCATTACTCAGAGGATAAGCTAGAGAAACTTGTATCCAAGGACAGCCTGCATTATGAGATAATTTGCTTCCACTACTATGTTCAATACCATTTACATTTACAATTATCAGAAGCTGCAGAATATGCAAGAAAGAAGGGAGTGATACTAAAGGGAGATCTTCCTATTGGAGTTGACAGAAACAGTGTGGATACCTGGGTTTATCCAAATTTGTTTCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTGACACAGATGGCAAAATATTTTACAGCTTACAGGATTGATCACATTTTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCAGGAAGAACTTGAACGAGAAGGAATATGGGACTTTAATCGCCTAAGTTACCCATATATTAAGCGGGAACTATTACAGGAAAAATTTGGTGATGCTTGGACTTTTGTTGCAACAACTTTTCTAAAGGAAATTGACAAGAACTTCTATGAGTTCAAGGAGGATTGCAACACAGAGAAAAAAATTGCTTCCAAACTGAAAACTTGTGCAGAAAGTTCTCTCTTGTTGGAGAGTGTAGACAAATTGCAGCGTAATCTCTTTGATCTTTCACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCATAAGTTTCCAGGATTTGGATGATCATAGCAAGAATGTTCTCAAACGATTATACCATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGGGAAGATTTGGGTCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGGTATGTGCCCCTTCATGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGACTCCGGTTTTTCAAGAATGTGATGGAGTCCGATGGGTTGCCGCCCGATCAATGTGTTCCAGAAGTTGCACATTTTGTTATAAGGCAGCATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGCTAGCATTAAAAGAAGAATATACAACACGCCCTGCAACAGAGGAGACAATCAATGACCCTACGAATCCGAAGCACTATTGGAGATTCCGTGTGCATGTGACTTTGGAATCATTGATCAAGGATAATGACCTCCAAACCACCATCAAAGATCTCGTCAGTTGGAGTGGAAGATCACTCCCTAAGGAAGACGACTCAGAAATAGAAGCGAGCCCAGTGTCGGTGTTGTCAGCAGCAGAAGCTCTTTCTGAGAAGCAGAAGTTTGCCAGTACCACGGAAAAGCCTGTTCTTGTCAAATAA

Predicted protein sequences of Glyma19g30580

Limit To All Plant Sequences

>Glyma19g30580.1   sequence type=predicted peptide   gene model=Glyma19g30580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNPGLFSANKSTNSVKVSFRIPYFTQWGQSLLVCGSVPVLGSWNVKKGVLLSPVHQGAELIWGGSITVPKGFQCQYSYYVVDDNKNVLRWEMGKKRELVLREGIQSGQEIEFRDLWQTGSDALPFRSAFKDVIFRQSWDLSDATVGVNHINVEPEGEAILVQFKISCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYFGESVWKAECVMQRSDFPIKYRYGKYDRSGNFSIESGPNREVYANSPRNEAKYIFLSDGMMREIPWRGAGVAVPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSKNIPEEIKKEIEKAKQQLDGKDVDYEATMATKLSIAKKVFAQEKDLILNSSSFKEFFSENEGWLKPYAAFCFLRDFFETSDRTQWGCFAHYSEDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAATGLVGKFRPSIPLSQEELEREGIWDFNRLSYPYIKRELLQEKFGDAWTFVATTFLKEIDKNFYEFKEDCNTEKKIASKLKTCAESSLLLESVDKLQRNLFDLSQNIVLIRDPEDPRKFYPRFNLEDTISFQDLDDHSKNVLKRLYHDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDLEFGIPSKYSYMTVCAPSCHDCSTLRAWWEEDEERRLRFFKNVMESDGLPPDQCVPEVAHFVIRQHFEAPSMWAIFPLQDLLALKEEYTTRPATEETINDPTNPKHYWRFRVHVTLESLIKDNDLQTTIKDLVSWSGRSLPKEDDSEIEASPVSVLSAAEALSEKQKFASTTEKPVLVK*

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