Report for Sequence Feature Glyma19g30550
Feature Type: gene_model
Chromosome: Gm19
Start: 38165118
stop: 38168143
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g30550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G12390 AT
Annotation by Michelle Graham. TAIR10: Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203
SoyBase E_val: 1.00E-79 ISS
GO:0006606 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into nucleus
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0022626 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome
SoyBase N/A ISS
KOG2239
KOG
Transcription factor containing NAC and TS-N domains
JGI ISS
PTHR21713 Panther
NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED
JGI ISS
PF00627 PFAM
UBA/TS-N domain
JGI ISS
PF01849 PFAM
NAC domain
JGI ISS
UniRef100_G7L4T7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nascent polypeptide-associated complex subunit alpha-like protein n=1 Tax=Medicago truncatula RepID=G7L4T7_MEDTR
SoyBase E_val: 2.00E-106 ISS
UniRef100_I1N8M5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8M5_SOYBN
SoyBase E_val: 1.00E-139 ISS
Expression Patterns of Glyma19g30550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g30550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g125500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g30550
Coding sequences of Glyma19g30550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g30550.1 sequence type=CDS gene model=Glyma19g30550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTGCGCAGACCCAAGAGGAGCTTCTTGCGCAACACCTCGAACAGCAAAAGATCCATGATGATGAACCTGTCGTCGAGGATGATGATGACGAGGAAGTGGATGATGATGATGACGATGAGGATGATGACCATGACGAAGGACTAGAAGGTGATGCATCTGGTAGGTCGAAGCAGACCAGAAGTGAAAAGAAGAGTCGCAAGGCAATGCTTAAACTTGGAATGAAACCTGTCACAGGTGTCAGTCGAGTGACAGTCAAGAAGAGCAAGAATATCCTGTTCGTAATCTCAAAACCAGACGTTTTCAAGAGTCCAACATCTGACACGTACATTATATTTGGGGAAGCCAAGATTGAAGACTTGAGCTCACAGCTACAAACTCAGGCGGCAGAGCAATTCAAGGCTCCTAATTTGAGCAATGATGGATTGAAGCCCGAATCTTCTGCTGTTGCTCAAGATGATGAGGAAGTGGATGAGGCTGGTGTAGATCCCAAGGACATAGAGTTGGTGATGACTCAAGCTGGTGTTTCAAGACCTAAAGCCGTTAAAGCTCTGAAGGCAGCCGGTGGTGACATTGTTGCGGCCATTATGGAGCTAACTAATTAA
Predicted protein sequences of Glyma19g30550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g30550.1 sequence type=predicted peptide gene model=Glyma19g30550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTAQTQEELLAQHLEQQKIHDDEPVVEDDDDEEVDDDDDDEDDDHDEGLEGDASGRSKQTRSEKKSRKAMLKLGMKPVTGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIIFGEAKIEDLSSQLQTQAAEQFKAPNLSNDGLKPESSAVAQDDEEVDEAGVDPKDIELVMTQAGVSRPKAVKALKAAGGDIVAAIMELTN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
