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Report for Sequence Feature Glyma19g30531

Feature Type:gene_model
Chromosome:Gm19
Start:38132796
stop:38134603
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30531
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56880AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245 SoyBaseE_val: 1.00E-40ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_D7LGI4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Atcambp25-binding protein OF 25 kDa n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LGI4_ARALL SoyBaseE_val: 2.00E-39ISS
UniRef100_UPI0001CAA581UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001CAA581 related cluster n=1 Tax=unknown RepID=UPI0001CAA581 SoyBaseE_val: 2.00E-163ISS

Expression Patterns of Glyma19g30531
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30531 not represented in the dataset
Glyma19g30531 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30531
ParalogEvidenceComments
Glyma03g27560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30531 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g125300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30531
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g30531
>Glyma19g30531.1   sequence type=CDS   gene model=Glyma19g30531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCATCTCAGAACGTAGCCAGCATTGAGCCATGGATGCTTCGCCCACCTGTCACCGATTCATGGCTCGCAGAGTTCTTCGCTCGCGACGCCGATACCCTAACCAGGGCTCTTCAGAAGTCTCTCTCCGGCGCTGTTCTGCCGCAGGACAACCACCTTTCTCCGTTTCTGCACCAGCCCGCCGCCGCCGCCGCCACCCCCACCGTGTCCAGCCTCTCCGGCTCCGATCAGGAGTCGGCGCCGCGCCGCCGTGCGGCGCCTCCGCCCTCTGGGAAGATCTCCAAGAGGAAGTCGCGCGCCTCGAAGCGCTCGCAGACGACGTTCATCACCGCGGACCCCGCCAACTTCCGGCAGATGGTCCAGCAGGTTACCGGCGTGCGGTTCGGCGGCGCGCCAATTGCGCCGGCGGCGGTGGTGAAGCCCGAGCCGCAGCGCGCCTCGGGCCTCGCCAGGTTCCCCGCCGGCGTGGGGTGCCTTCCGACGCTCGACACGTCGGCCTTCCTGCTGGACCATCACCAGCAGCAGGTGGTGCCCGCCTCTGTTAACTCTGGGCCTGGCACCGGGCTTTCTGGGCCCGGCCCACTCCCCTTCGCCCAACCCCTCCTTGACGCTCACGCTGCTTCCTTCGCTTCCTCAGGGTTAGATTTTGACACCTTCTCCAACTTCCCCACTCTCGAGTCGTGGAAAGTCATGTGA
Predicted protein sequences of Glyma19g30531
>Glyma19g30531.1   sequence type=predicted peptide   gene model=Glyma19g30531   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSQNVASIEPWMLRPPVTDSWLAEFFARDADTLTRALQKSLSGAVLPQDNHLSPFLHQPAAAAATPTVSSLSGSDQESAPRRRAAPPPSGKISKRKSRASKRSQTTFITADPANFRQMVQQVTGVRFGGAPIAPAAVVKPEPQRASGLARFPAGVGCLPTLDTSAFLLDHHQQQVVPASVNSGPGTGLSGPGPLPFAQPLLDAHAASFASSGLDFDTFSNFPTLESWKVM*






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