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Report for Sequence Feature Glyma19g30520

Feature Type:gene_model
Chromosome:Gm19
Start:38106162
stop:38111520
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19750AT Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:6677124-6679127 FORWARD LENGTH=288 SoyBaseE_val: 2.00E-88ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005778GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1944 KOG Peroxisomal membrane protein MPV17 and related proteins JGI ISS
PTHR11266Panther PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 JGI ISS
PTHR11266:SF4Panther PXMP-2 - RELATED JGI ISS
PF04117PFAM Mpv17 / PMP22 family JGI ISS
UniRef100_G7L4T1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein Mpv17 n=1 Tax=Medicago truncatula RepID=G7L4T1_MEDTR SoyBaseE_val: 8.00E-90ISS
UniRef100_UPI0001D16704UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001D16704 related cluster n=1 Tax=unknown RepID=UPI0001D16704 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g30520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30520
ParalogEvidenceComments
Glyma03g27541 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g125200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g30520
>Glyma19g30520.1   sequence type=CDS   gene model=Glyma19g30520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTATGGAGGAGCAATGTGCGCTCACGCGCACAAATTCCTACTCTCGCCCCGTGCCCTCAACCTTTGCCGTCAAAACACCACTCGCCTTCAACAATTTCAAACTCTCACTCCGCTCCACTCTCAATCCCTTCCTTTCAACTTCAAAAACTCCGCCACCCCCTTCAAACCCACCCTCATCCGCCTCTCCGCCCTCTCCAACGATGGCTCCGGCGGAAACGGCCCACATGGCGGCGCCGGCGGAGGCGGAGGCTCTGACGGTCCCAATTCTGGCGGCGCCGGCGATGGAGGAGGCAAGTGGTCCTTCTTGTCATGGTACTTGGCTCTTCTTGGAAAATACCCTGTTGCCGTGAAAGCTCTAACATCTTCAATTTTGAATCTAATTGGAGATTTGATTTGTCAGCTTGTGATAGACCAAGTGCCGTCACTGGATTTCAAGAGGACATTTGTCTTTACTTTTCTTGGTTTTGCTTTAGTGGGTCCAACACTGCATTTCTGGTATTTGTATCTGAGTAAATTGGTTACACTTCCTGGAGCATCAGGTGCACTTTTACGGCTTGTACTTGATCAGTTCTTATTTTCACCCATATTCATCGGAGTTTTCTTATCTACATTGGTGACACTGGAGGGAAACCCATCACGAGCTGTACCCAAGCTTAAACAGGAGTGGTTTTCTGCAGTTCTAGCAAACTGGAAACTATGGATACCTTTTCAATTTCTCAACTTCAGATTTGTTCCACAACAATTTCAGGTCCTTGCTGCCAATGTTATTGCTTTGGTGTGGAATGTTATTCTCTCATTTATGGCACATAAAGAGGTTCTTCCAAAATAG
Predicted protein sequences of Glyma19g30520
>Glyma19g30520.1   sequence type=predicted peptide   gene model=Glyma19g30520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYGGAMCAHAHKFLLSPRALNLCRQNTTRLQQFQTLTPLHSQSLPFNFKNSATPFKPTLIRLSALSNDGSGGNGPHGGAGGGGGSDGPNSGGAGDGGGKWSFLSWYLALLGKYPVAVKALTSSILNLIGDLICQLVIDQVPSLDFKRTFVFTFLGFALVGPTLHFWYLYLSKLVTLPGASGALLRLVLDQFLFSPIFIGVFLSTLVTLEGNPSRAVPKLKQEWFSAVLANWKLWIPFQFLNFRFVPQQFQVLAANVIALVWNVILSFMAHKEVLPK*






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