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Report for Sequence Feature Glyma19g30470

Feature Type:gene_model
Chromosome:Gm19
Start:38075503
stop:38080612
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10740AT Annotation by Michelle Graham. TAIR10: alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678 SoyBaseE_val: 0ISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0045493GO-bp Annotation by Michelle Graham. GO Biological Process: xylan catabolic process SoyBaseN/AISS
GO:0046373GO-bp Annotation by Michelle Graham. GO Biological Process: L-arabinose metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0009044GO-mf Annotation by Michelle Graham. GO Molecular Function: xylan 1,4-beta-xylosidase activity SoyBaseN/AISS
GO:0016798GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds SoyBaseN/AISS
GO:0046556GO-mf Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity SoyBaseN/AISS
PF06964PFAM Alpha-L-arabinofuranosidase C-terminus JGI ISS
UniRef100_G7L4S0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-L-arabinofuranosidase n=1 Tax=Medicago truncatula RepID=G7L4S0_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233789BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233789B related cluster n=1 Tax=unknown RepID=UPI000233789B SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g30470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30470
ParalogEvidenceComments
Glyma03g27490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g124700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g30470
>Glyma19g30470.2   sequence type=CDS   gene model=Glyma19g30470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGAAGCTGGGGGCACACAAGTTCCATCAAATATTGCACCTTGGACTATAGTAGGACAAGAGTCAGCTATTTTACTACAAACTCAACTTAGTTCTTGCTTTGAACGCAACAAGGTTGCATTAAAAATGGATGTGCGGTGTGACAATTGCCCTTTTGATGGCGTTGGTGTCTCTCACCCGGGTTTTTGGGGTATGAAATACAAAGTTGTATTCTTTGTTAGATCAGAAGGACCACTTGATACGACAGAATCATTAAGAAAAAGTGAAGGTGGAGGGATATTAGCTTCTAGCAATATCAATACTTCTGAATCAGAAATTTCAAACTGGAAAAGGATGGAAACTACATTGGTAGCAGATGCATCTAGTTCCAATTCTTCTTTGTATTTAACAACAACCAAAAAGGGGGACTTGGTTAACATGCTAATAAATTTGAAACCAATCATTTTCAGATTTTTAGGTGGCTGTTTTATTGAAGGACAAACATTAAGAAATGCATTTCGGTGGAAAGATAGAGTTGGACCCTGGGAACAGAGACCTGGGCACTTTGGTGATGTTTGGAGCTATTGGACAGATGAAGGATTTGGTTATTTTGAGGGTCTTCAACTAGCAGAGGACATTGGTGCAAGGCCATTGTGGGTATTTAACAACGTTGATACAAACATCATCACACCTTTTGTGCAAGAAGCCCTTGATGGTATTGAGTTTGCCAGAGATGAGGCTACTTCTAGATGGGGTTCCCTTAGAGCATCTATGGGGCACCCAAAGCCTTTTGACCTAAAAAATGTTGCTATTGGAAATGAAGATTGTGGAAAGACAAACTACCAAGGCATGCTCTCTCGTTTTCTTTTATCCTTTTTTAAGAACTACCTAGCTTTCTACAAGACAATACGACATGCGAATCCGGATATCCAAATTATTTCCAAACCATTAGATCACCCAGCCGATATGTATGATTACCACGCAATATCCTATCTCTTACAATTAACATTCACTTATCCTCATGAAGCTATAAAAATGTTTAATAACGCTCATGTGTTTGATAAGACACCACGAAATGACCCAAAGCATGGAACCCTTTTGGGAGCTGTGTCCGAAGCTGGATTCCTTATTGGATTAGAAAGAAACAGTGATCATGTGATAATGGCTAGCTATACGCCACTTTTTGTAAATGCAAATGACAGGATGTGGAACCGGGATGCAATTGTTTTTAATTCCAATCATGTATATGGAACTCCTAGCTATTGGGTGCAGTTTATGTTTAGAGAGTCAAATGGAGCAACATTTCTAAAATCACAACTTCAAACGCCTGACTCTGATTCAGTTCCTGCATCTGCAATTCTTTGGATAAATCCCCAAGATAAAAAAACTTACTTAAAAATAAAGGTTGCAAACGTGGGGAACAACCAAATAAATTTTAAGATTTCCCTAAATGGATTTGAGAGCTCAAATGCAACTAAGGCAACAAAGACAATGCTCACATCTGAAAATGCATTAGATGAGAATAGCTTCGCAAATCCCAAAGAGATAGTACCAAAGCGAAATCCACTTCAGAGTGCTAGACATACTTCCTCC
Predicted protein sequences of Glyma19g30470
>Glyma19g30470.2   sequence type=predicted peptide   gene model=Glyma19g30470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FEAGGTQVPSNIAPWTIVGQESAILLQTQLSSCFERNKVALKMDVRCDNCPFDGVGVSHPGFWGMKYKVVFFVRSEGPLDTTESLRKSEGGGILASSNINTSESEISNWKRMETTLVADASSSNSSLYLTTTKKGDLVNMLINLKPIIFRFLGGCFIEGQTLRNAFRWKDRVGPWEQRPGHFGDVWSYWTDEGFGYFEGLQLAEDIGARPLWVFNNVDTNIITPFVQEALDGIEFARDEATSRWGSLRASMGHPKPFDLKNVAIGNEDCGKTNYQGMLSRFLLSFFKNYLAFYKTIRHANPDIQIISKPLDHPADMYDYHAISYLLQLTFTYPHEAIKMFNNAHVFDKTPRNDPKHGTLLGAVSEAGFLIGLERNSDHVIMASYTPLFVNANDRMWNRDAIVFNSNHVYGTPSYWVQFMFRESNGATFLKSQLQTPDSDSVPASAILWINPQDKKTYLKIKVANVGNNQINFKISLNGFESSNATKATKTMLTSENALDENSFANPKEIVPKRNPLQSARHTSS






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