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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10740 | AT | Annotation by Michelle Graham. TAIR10: alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678 | SoyBase | E_val: 0 | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0045493 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan catabolic process | SoyBase | N/A | ISS |
| GO:0046373 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-arabinose metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0009044 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xylan 1,4-beta-xylosidase activity | SoyBase | N/A | ISS |
| GO:0016798 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds | SoyBase | N/A | ISS |
| GO:0046556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity | SoyBase | N/A | ISS |
| PF06964 | PFAM | Alpha-L-arabinofuranosidase C-terminus | JGI | ISS | |
| UniRef100_D7RIC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-L-arabinofuranosidase n=2 Tax=Medicago truncatula RepID=D7RIC7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8L7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8L7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g30460 not represented in the dataset |
Glyma19g30460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g124600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30460.1 sequence type=CDS gene model=Glyma19g30460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTATTGTTCTCTCAAGGTTTTGTTTGGTGTTGTGCTCTATGCCTTTGCGTTCCAACATTGCTACGCTGATGCAAACTCAACACTGATTGTAAATGCTGCTTCCAATAATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAATAGAGGCTTTGAAGCTGGAGGCCCAAACAATGCCTTAAATGTTTATAATTGGTCTATTATTGGAGATGAATCATCCATTTCGGTATCAATTAGCCGTACCTCTTGCTTTGAGCGCAATAAAGCTGCATTGCAAATGGAGGTGTATTGTGGTGCTCACAAACCTTGCCCATATGGTGTTGGTATCTCTAACCCTGGTTATTGGGGCATGAATATTGAGCAAGGGAAGAGGTATAAGGTGGTCTATCATGTTAAATCAGAAAGAAAGTTTGATTTTCAACTGTCATTCACGGGTGTTGATGTTATAAAAGTGGCATCTAGTAGAAGACATGTTTATGGAGATGGAAAATGGAAAAGGGTGGAGACAATAGTGGAAGCAAAAACTACTAATCACTATTCAAGTCTTCAAATAACCACAACAAGAGAAGGGAGTTACTTGTTAGACCAAGTGTCAGTTATGCCATTGGACACTTACATGGGTCATGGCTTCCGAAATGACCTTTTTCAAATGGTGGCAGATTTGAAACCAAAATTTCTCAGATTTCCAGGTGGTTGTTATGTTGAAGGAAATTATCTGAGAAACCGATTTCAATGGAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGCTAGCAGAGGACCTTGGGGCATTGCCGATATGGGTGTTTAACGCTGGTTTCGGCCTTAATGATGAAATTGATACATCATCCATAGAATCCTATGTGCAAGACGCCCTCGATGGCATTGAATTTGCAAGAGGCTCTCCTACATCACAATGGGGTTCTGTTAGAGCTGCAATGGGACATCCTACCCCATTTGACTTGAGATATGTTGCTGTTGGAAATGAAAATTGTTGGCAAACTTATTTTAATTATCAAGGAAACTACCTTAAGTTCTATGAGGCTATAAAAGCTGCCTACCCAGATATTCAAATTATCTCAAATTGTGATGCTTCCAGAAAACCATTAAATCACCCGGCTGATTTGTTCGATTTTCATACATATCCAAGCTCCAATGACATGTTTTCTCTGTTTACTAAGTTCGACAACACATCACGATCTGGTCCAAAGGCTTTTGTTAGTGAATACGCTGTGAAAAGTGATGCTGCAAACGGAAATCTCTTGGCTGCTGTGGCTGAAGCCGCATTTCTTATTGGACTAGAAAAGAACAGTGATATTGTGGAGATGGTTTCTTATGCACCACTTTTCTTAAATATAAATGACAAGAGATGGATTCCCGATGCAATTGTGTTCGACTCTTATCAGGTTTATGGAACTCCTAGCTATTGGGTGCAGAAACTTTTTATTGAATCCAGTGGAGCAACATTTATTGACTCGACACTCAGTACAACTTCATCTAATAAACTTGCTGCATCTGTAATTATTTGGCAAGATTCTTCAGATAAGAAAAATTACCTAAGAATAAAGGCAGTAAACTTTGGAGCAGCCGCTGAGAGTCTTGACATTGATTTAAGTGGGTTGGACTCAAATGTGCAACAATATGGTTCTACAATAACAGTGCTTACATCAACCAACGTAATGGATGAAAATTCATTCTTGGAGCCGAAGAAGGTGGTGCCACAAACAAGTCCATTGGAGATTGATGACAAACACCTGATTGTTCTTCTCCCTTCCTATTCAGTGATATCATTGGATTTTTTAATATGA
>Glyma19g30460.1 sequence type=predicted peptide gene model=Glyma19g30460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAYCSLKVLFGVVLYAFAFQHCYADANSTLIVNAASNNATARQIPNTFLGVFVEEINHAGAGGLWAELVINRGFEAGGPNNALNVYNWSIIGDESSISVSISRTSCFERNKAALQMEVYCGAHKPCPYGVGISNPGYWGMNIEQGKRYKVVYHVKSERKFDFQLSFTGVDVIKVASSRRHVYGDGKWKRVETIVEAKTTNHYSSLQITTTREGSYLLDQVSVMPLDTYMGHGFRNDLFQMVADLKPKFLRFPGGCYVEGNYLRNRFQWKDTIGPWEERPGHLGDVWNYWSDDGIGFFEYLLLAEDLGALPIWVFNAGFGLNDEIDTSSIESYVQDALDGIEFARGSPTSQWGSVRAAMGHPTPFDLRYVAVGNENCWQTYFNYQGNYLKFYEAIKAAYPDIQIISNCDASRKPLNHPADLFDFHTYPSSNDMFSLFTKFDNTSRSGPKAFVSEYAVKSDAANGNLLAAVAEAAFLIGLEKNSDIVEMVSYAPLFLNINDKRWIPDAIVFDSYQVYGTPSYWVQKLFIESSGATFIDSTLSTTSSNKLAASVIIWQDSSDKKNYLRIKAVNFGAAAESLDIDLSGLDSNVQQYGSTITVLTSTNVMDENSFLEPKKVVPQTSPLEIDDKHLIVLLPSYSVISLDFLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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