Glyma19g30450 - SoyBase

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Report for Sequence Feature Glyma19g30450

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38053750
stop:	38063991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10740	AT	Annotation by Michelle Graham. TAIR10: alpha-L-arabinofuranosidase 1 \| chr3:3361031-3364573 REVERSE LENGTH=678	SoyBase	E_val: 0	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0045493	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan catabolic process	SoyBase	N/A	ISS
GO:0046373	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0009044	GO-mf	Annotation by Michelle Graham. GO Molecular Function: xylan 1,4-beta-xylosidase activity	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
GO:0046556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity	SoyBase	N/A	ISS
PF02018	PFAM	Carbohydrate binding domain	JGI		ISS
PF06964	PFAM	Alpha-L-arabinofuranosidase C-terminus	JGI		ISS
UniRef100_D7RIC7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-L-arabinofuranosidase n=2 Tax=Medicago truncatula RepID=D7RIC7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8L6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8L6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30450

Paralog	Evidence	Comments
Glyma03g27460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g124500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30450

Limit To All Plant Sequences

>Glyma19g30450.1   sequence type=CDS   gene model=Glyma19g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCATCCAAGGCCTTATGCAGTGTTTCTCTGCTCCATTTGTTCATAGTGGTTTGCCTTGTCTTCCAATGCTTTGCTACTAAAAACCATGCTGACCTGACCACAACTCTAACTGTGAATGCTTCTGATGCATCTGGAAAGCCAATACCAGAGACACTTTTTGGCATATTCTTTGAGGAGATTAATCATGCTGGAGCTGGGGGATTGTGGGCTGAGCTTGTGAGCAACAGAGGATTTGAAGCTGGCGGTCCTAACACTCCTTCAAATATTGATCCTTGGTCAATTATTGGAAATGAATCATTGATAAATGTTGAAACTGATCGTACCTCTTGCTTTGACCGTAATAAGGTTGCACTTCGATTGGAGGTATCATGTGACAGCGAAGGTGACAACATCTGCCCAGCTGATGGTGTTGGTGTTTATAATCCTGGTTTCTGGGGCATGAATATTGAGCAAGGGAAGAAATACAAAGTGGTCTTCTATGTTCGTTCAACTGAATCACTTAATCTAACAGTTTCATTGACTGGATCCAATGGTGTAGGAAACCTGGCTTCATCTGTGATCACAGGTTCTGCACTTGATTTTTCAAACTGGACAAAGGTGGAGAAGATACTGGTTGCCAAGGCAACAGATAATAACTCAAGACTTCAATTAACAACCACCACCAAAGGTGTGATATGGTTGGACCAAGTGTCTGCTATGCCACTGGACACATATAAGGGACATGGTTTCCGAACTGACCTTGTTGAAATGCTGACAGCTTTGAAACCAAGATTTATCAGATTTCCGGGCGGTTGTTTTGTTGAAGGAGAATGGTTAAGAAATGCATTTCGATGGAAAACATCCATTGGACCATGGGAGGAGAGACCTGGGCACTTTGGTGATGTTTGGATGTACTGGACTGATGATGGACTTGGTTATTATGAGTTTCTCCAACTTGCAGAGGACTTGGGTGCTTCACCAATATGGGTATTTAATAATGGTGTCAGTCATAATGATCAAGTTGATACATCGGCGGTCTTACCTCTTGTGCAAGAAGCCCTTGATGGAATTGAGTTCGCGAGAGGTGATCCCACTTCAAAATGGGGTTCCCTTAGAGCTGCTATGGGACATCCTGAGCCATTTGACCTCAGATATGTTGCTGTTGGGAATGAAGATTGTGGAAAAAAGAATTATCGAGGAAACTACCTGAAATTCTATAGTGCAATAAAAAGTGCTTATCCAGATATCCAAATTATCTCAAACTGTGATGGTTCTTCTCGACCTTTAGATCATCCAGCTGATATGTATGATTATCATGTTTATACAAATGCGAATGACATGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCCTCTTGGCAGCCCTAGCTGAAGCTGGCTTCCTAATTGGACTGGAAAAGAACAGTGATGTTATCCAAATGGCCAGCTATGCTCCACTTTTTGTTAATGCCAATGATAGGAGGTGGAACCCGGATGCAATTGTATTCAACTCCTTTCAGCTCTATGGAACTCCTAGCTATTGGGTGCAACTATTTTTCTCAGAGTCAAGTGGAGCAACACTTCTAAGTACATCACTTCAAGCACCTTCCTCAAATTCACTTGTTGCATCAGCAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGATGGACTGGAACCAAACTCATTGCAGTTATCTGGGTCAACAAAGACTGTGCTTACATCTGCAAATGTAATGGATGAGAACTCCTTCTCACAGCCAAAGAAGGTGGTGCCAATCCAAAGTCTACTTCAGAATGTTGAGAAGGACATGAATGTCACAGTCCCACCTCGTTCGTTCACATCATTTGATCTGCTGAAACAATCCAGTAATTTGAAGATGGCAGGGAGCGATTCTTCCACGTGGTCTTCTATTTAA

Predicted protein sequences of Glyma19g30450

Limit To All Plant Sequences

>Glyma19g30450.1   sequence type=predicted peptide   gene model=Glyma19g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSKALCSVSLLHLFIVVCLVFQCFATKNHADLTTTLTVNASDASGKPIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWSIIGNESLINVETDRTSCFDRNKVALRLEVSCDSEGDNICPADGVGVYNPGFWGMNIEQGKKYKVVFYVRSTESLNLTVSLTGSNGVGNLASSVITGSALDFSNWTKVEKILVAKATDNNSRLQLTTTTKGVIWLDQVSAMPLDTYKGHGFRTDLVEMLTALKPRFIRFPGGCFVEGEWLRNAFRWKTSIGPWEERPGHFGDVWMYWTDDGLGYYEFLQLAEDLGASPIWVFNNGVSHNDQVDTSAVLPLVQEALDGIEFARGDPTSKWGSLRAAMGHPEPFDLRYVAVGNEDCGKKNYRGNYLKFYSAIKSAYPDIQIISNCDGSSRPLDHPADMYDYHVYTNANDMFSRANTFDHTSRNGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDVIQMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWVQLFFSESSGATLLSTSLQAPSSNSLVASAITFQNSVDKKNYIRIKVVNFGTTAVNLKISLDGLEPNSLQLSGSTKTVLTSANVMDENSFSQPKKVVPIQSLLQNVEKDMNVTVPPRSFTSFDLLKQSSNLKMAGSDSSTWSSI*

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