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Report for Sequence Feature Glyma19g30421

Feature Type:gene_model
Chromosome:Gm19
Start:38030946
stop:38036589
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30421
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01650AT Annotation by Michelle Graham. TAIR10: RING domain ligase1 | chr3:242734-245062 FORWARD LENGTH=489 SoyBaseE_val: 1.00E-125ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009690GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process SoyBaseN/AISS
GO:0009850GO-bp Annotation by Michelle Graham. GO Biological Process: auxin metabolic process SoyBaseN/AISS
GO:0080148GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of response to water deprivation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG4172 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR10857Panther COPINE JGI ISS
PF07002PFAM Copine JGI ISS
UniRef100_G7L6A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RGLG2 n=1 Tax=Medicago truncatula RepID=G7L6A8_MEDTR SoyBaseE_val: 9.00E-149ISS
UniRef100_I1N8L5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N8L5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g30421
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30421 not represented in the dataset
Glyma19g30421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g30421 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g124300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30421
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g30421
>Glyma19g30421.2   sequence type=transcript   gene model=Glyma19g30421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGCCGAACATGACCGTTTTAAGTTTGAGTTCCAATAAAAAACGCGAAACTTCCATGCTCTTGCTTCTCCAACACTCCCACAAAAGCCTTCAAAAAGGAAGAACAAAAAAGATCCTCTCCTTTTCCCTTCTCTGTTCTGCACACCTTTTCATAGTTTTCAAAAAAATTCCATATTCAAATCTCAATTATTGCTCTCATTTTGCGTATACACCATTCAAGATTCTCAGCCAGTGTTACTCCACGCACCATCCCTGAACACTCCAACATCATATCACGTTTTATTTACTCTTCATCTCAATCATCATAAGGTATCTTCAAGATTAAGATACATAAAGTTTTGGTGAGTTCGGTCTAGGGAAAGAGGAGAACATTCCTCAAGGTTATAAGAGAGCTTACAAAAATACTTAGATGTCGTCCACCAACAAAAAGGTTAGAACTCCCACAGTCGTTTCCACCTTTCTGCGCCTGAAACAGTAAACGCCGTTCAGTTTTAATTCCTTTTGTTGGTTATTCTGTTGACTATGAAGCACTTGAGGAATCTACGTTAGTCTCATCACGATCGTGTGTTCTTTATTCTAGGCCTTGAGTCTTCTAATCTTATTGTTGGTGTTGATTTTACCAAGAGTAATGAGTGGACAGGCAAGAATTCATTCAATAGGCGAAGCTTGCATCACATTGGGAGAGGTCTGAACCCTTATGAGCAAGCAATATCAATTATTGGGAAAAGCTTGGCAGCATTCGATGAGGATAACTTGATCCCCTGCTTTGGATTTGGAGATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCTGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAGCAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACTAAGTCCACAAGAACAGAAGACTGTGGATACCATAGTTGCTGTTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACTGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACATGGCAGCAATAGAGCTTAATCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCACATATAGTTCTCGTGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCAACTTATGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTACAGGAGCCCCATAAATACAATAATTAAGCTTTATAATCGTATGTGGCTTGGGAATTGGTATTTTTTTTCTTATTTTTGCGTTGTGCCAGTCACAATTCTTTGGTTTTTTCTTGATTCGTTAAATTCATCAAAGGTTAGAAGTAGGTGTGGTTGGGTGCAACACTTGATCAGATGTATGTTTCCAGATATGAAACGGGGAATTCTCCATCAATTATTCTACATATATTCATTTGATGAATTATATTTCGATGCGGTACCTTTGGAACAAAAACCGGTAAAAGAAATGCAAATAGGACAATAGAAATAGCTTGATGCAAATGTATATTAGCACTCCGAAACCTCAACTTATTCCTACAAAGCCAAATAACCCATAATGAATCATTGTTGAAAAAACAACTTTTATTCGTATCTTATAAGTTTGACATTGGAATTTGGCATATCAAATTTTGTTTTGATCTAAAG
Coding sequences of Glyma19g30421
>Glyma19g30421.1   sequence type=CDS   gene model=Glyma19g30421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCTGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAGCAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACTAAGTCCACAAGAACAGAAGACTGTGGATACCATAGTTGCTGTTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACTGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACATGGCAGCAATAGAGCTTAATCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCACATATAGTTCTCGTGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCAACTTATGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTACAGGAGCCCCATAAATACAATAATTAAGCTTTATAATCGTATGTGGCTTGGGAATTGGTATTTTTTTTCTTATTTTTGCGTTGTGCCAGTCACAATTCTTTGGTTTTTTCTTGATTCGTTAAATTCATCAAAGGTTAGAAGTAGGTGTGGTTGGGTGCAACACTTGATCAGATGTATGTTTCCAGATATGAAACGGGGAATTCTCCATCAATTATTCTACATATATTCATTTGATGAATTATATTTCGATGCGGTACCTTTGGAACAAAAACCGGTAAAAGAAATGCAAATAGGACAATAG

>Glyma19g30421.2   sequence type=CDS   gene model=Glyma19g30421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCAACACACGATCAAGATGTCTTCAGTTTCTATCCGAGTGAAAGATTTTGCTGATGGATTTGAAGATGTGTTGAGTCGGTATAGGGAAATTGTTCCTCATCTTCGACTTGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGAGCATTGTTGAGCAGAGTGGAGGCCAGTACCATGTGTTGGTGATAATCGCAGATGGCCAGGTAACAAAAAATGTTGACACTAAACATGGGAGACTAAGTCCACAAGAACAGAAGACTGTGGATACCATAGTTGCTGTTAGTAAATTTCCTCTTTCAATCATATTGGTTGGCGTTGGAGATGGACTGTGGGACATGATGAAGGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACAGAGATTATGTCAAAAAGCATCCCTCCTTCACGAAAAGAGGCAGCATTTGCACTTGCTGCATTGATGGAAATTCCTTCTCAGTACATGGCAGCAATAGAGCTTAATCTACTGGGTAGTCGGCAAGCCAATGCTCCTCAAAGACATGCTCTTCCACCTCCCACATATAGTTCTCGTGCTGCAAGGTTTGAGCCAAGTATCCCTCCTCAACATGGCAACAGCCACCCATTTGCCACAGCTCCTTCTGCCCCAAGTTCAACTTATGACAATCAACTTTGTCCCATTTGTCTAAGCAATGCGAAAGATATGGCCTTCGGATGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATGTACAGGAGCCCCATAAATACAATAATTAAGCTTTATAATCGTATGTGGCTTGGGAATTGGTATTTTTTTTCTTATTTTTGCGTTGTGCCAGTCACAATTCTTTGGTTTTTTCTTGATTCGTTAAATTCATCAAAGGTTAGAAGTAGGTGTGGTTGGGTGCAACACTTGATCAGATGTATGTTTCCAGATATGAAACGGGGAATTCTCCATCAATTATTCTACATATATTCATTTGATGAATTATATTTCGATGCGGTACCTTTGGAACAAAAACCGGTAAAAGAAATGCAAATAGGACAATAG
Predicted protein sequences of Glyma19g30421
>Glyma19g30421.1   sequence type=predicted peptide   gene model=Glyma19g30421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQHTIKMSSVSIRVKDFADGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRLSPQEQKTVDTIVAVSKFPLSIILVGVGDGLWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYMAAIELNLLGSRQANAPQRHALPPPTYSSRAARFEPSIPPQHGNSHPFATAPSAPSSTYDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMYRSPINTIIKLYNRMWLGNWYFFSYFCVVPVTILWFFLDSLNSSKVRSRCGWVQHLIRCMFPDMKRGILHQLFYIYSFDELYFDAVPLEQKPVKEMQIGQ*

>Glyma19g30421.2   sequence type=predicted peptide   gene model=Glyma19g30421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQHTIKMSSVSIRVKDFADGFEDVLSRYREIVPHLRLAGPTSFAPIIEMAMSIVEQSGGQYHVLVIIADGQVTKNVDTKHGRLSPQEQKTVDTIVAVSKFPLSIILVGVGDGLWDMMKEFDDNIPARAFDNFQFVNFTEIMSKSIPPSRKEAAFALAALMEIPSQYMAAIELNLLGSRQANAPQRHALPPPTYSSRAARFEPSIPPQHGNSHPFATAPSAPSSTYDNQLCPICLSNAKDMAFGCGHQTCCECGQDLQSCPMYRSPINTIIKLYNRMWLGNWYFFSYFCVVPVTILWFFLDSLNSSKVRSRCGWVQHLIRCMFPDMKRGILHQLFYIYSFDELYFDAVPLEQKPVKEMQIGQ*






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