SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07060 | AT | Annotation by Michelle Graham. TAIR10: NHL domain-containing protein | chr3:2232760-2236913 FORWARD LENGTH=774 | SoyBase | E_val: 0 | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR24104 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24104:SF9 | Panther | JGI | ISS | ||
| UniRef100_G7L141 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 n=1 Tax=Medicago truncatula RepID=G7L141_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EB72 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EB72 related cluster n=1 Tax=unknown RepID=UPI000233EB72 | SoyBase | E_val: 0 | ISS |
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Glyma19g30400 not represented in the dataset |
Glyma19g30400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g124200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g30400.2 sequence type=transcript gene model=Glyma19g30400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCCAAACCCGCTTCATAACTGTCCCTCGATTCGTATTCATACCCTATTGTGCTTGTTTCATTTCACTTTCTTAATCCTTAAACCTTAAATGTTAAAACCCATTACTAGTATACTGCAGCACCGTTCGTTCATTGAAACCACAAACTCCAAACAGAGATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGTTCCCTCATATTAATATTATGGGTTTGAAAACAATTCACTCTTCTTCTGATCAAGTGCACCTAATCCAGTTACTGATGACAGAAAATATAACATTCCCCATTTTGTTGTCTCGGCAGAAATTTCCTAAGATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGACAGTAGATTCAGCTGCACAGTTGCATTTTTTATTCCTATCACATGTTTTATTGTTTGTACTGTGTCATCACTTGGTGTTTAGTAACCTGTGTCTCATTGCTATTTATTAGCTGGAGAAGGTTATTTACCAAAATACATTTTATTATTTGAAAATTTGATTTCATGTGCTTGGCTTTTTTAGCCGGGACTATATTGTTGCCTGACGGTAGAGTCAGTTCTTGAAGACCTCAATGGCTTATAAATGAAGTGAGGGTTTCTCCTTTGGATATTTTTTTTCTTTGTGGTGTTGATAAACTGTATCCTCTAAGTTCAAACTGATAGGAGATTGATTCTTCCAAGATCATTAAAGTGAATTCCTCTTCTAATAAACA
>Glyma19g30400.1 sequence type=CDS gene model=Glyma19g30400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGCATACAGAAATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGA >Glyma19g30400.2 sequence type=CDS gene model=Glyma19g30400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGTTCCCTCATATTAATATTATGGGTTTGAAAACAATTCACTCTTCTTCTGATCAAGTGCACCTAATCCAGTTACTGATGACAGAAAATATAACATTCCCCATTTTGTTGTCTCGGCAGAAATTTCCTAAGATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGA
>Glyma19g30400.1 sequence type=predicted peptide gene model=Glyma19g30400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRHRRLTKQLSKFLTPVLNAGNCCQQSSKALNLVALSIMHMPSAQSPIANWTQVRGFREYRISTKSDELCEPATEIDLLSFIKASLDEFEGTHHYWLNRSDNNDQLFGADGIFLVLSARVFDCGIKLEKLKTIQKRHTEIEKGACYILFKNFRSPVIYHEKDAGLEILSKAVQELQEQPGGDSKSLNVVRCTSLKQDGIIKDECSFSPLQNLLLYYPGCVSTDESNNRLFFSDCNHHRILVSGGNGEILDCIGSSPGFEDGDFESAKLRRPAGSYYHATEDCLYFVDSENNAIRKADMGARTVETLYPTSAPNKGGIQIWNWIMSKLGLESSGKTSVQERSEVFDSKLYFPWHLLKSPDDTFYIMDRRFQTLWVMDINSGKIDEVFEGSPRILKICGQLIMKSLSIIDQIPSDWFQQQTKNGFLLGGLQHSDLLSSLATLHNHIFICDPVGQRILKVNRESGVCSNFWLSNLGILGLPYWLNFPLETFYAVANGLSGTPIDHLQHFDLLPGRIDINLRVDLPMDIELVVPLQESCIWYQARGAATETSGMDEVSLNKSGLAQQWYDELDDLAAPKPESEINVQDDNLDKKSVVEDEKVPFSVGVFTSPGTSEVIIYAALYCKLRSVPKSNEGNREEHAARILDILSSKRSGKIERDLWKAFLLQSKGDLRDLIFMKPLHIRLRLSCQDHPKADNGRDFILTDSSIKVDVLLN* >Glyma19g30400.2 sequence type=predicted peptide gene model=Glyma19g30400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRHRRLTKQLSKFLTPVLNAGNCCQQSSKALNLVALSIMHMPSAQSPIANWTQVRGFREYRISTKSDELCEPATEIDLLSFIKASLDEFEGTHHYWLNRSDNNDQLFGADGIFLVLSARVFDCGIKLEKLKTIQKRFPHINIMGLKTIHSSSDQVHLIQLLMTENITFPILLSRQKFPKIEKGACYILFKNFRSPVIYHEKDAGLEILSKAVQELQEQPGGDSKSLNVVRCTSLKQDGIIKDECSFSPLQNLLLYYPGCVSTDESNNRLFFSDCNHHRILVSGGNGEILDCIGSSPGFEDGDFESAKLRRPAGSYYHATEDCLYFVDSENNAIRKADMGARTVETLYPTSAPNKGGIQIWNWIMSKLGLESSGKTSVQERSEVFDSKLYFPWHLLKSPDDTFYIMDRRFQTLWVMDINSGKIDEVFEGSPRILKICGQLIMKSLSIIDQIPSDWFQQQTKNGFLLGGLQHSDLLSSLATLHNHIFICDPVGQRILKVNRESGVCSNFWLSNLGILGLPYWLNFPLETFYAVANGLSGTPIDHLQHFDLLPGRIDINLRVDLPMDIELVVPLQESCIWYQARGAATETSGMDEVSLNKSGLAQQWYDELDDLAAPKPESEINVQDDNLDKKSVVEDEKVPFSVGVFTSPGTSEVIIYAALYCKLRSVPKSNEGNREEHAARILDILSSKRSGKIERDLWKAFLLQSKGDLRDLIFMKPLHIRLRLSCQDHPKADNGRDFILTDSSIKVDVLLN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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