Glyma19g30400 - SoyBase

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Report for Sequence Feature Glyma19g30400

Feature Type:	gene_model
Chromosome:	Gm19
Start:	38000677
stop:	38023200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07060	AT	Annotation by Michelle Graham. TAIR10: NHL domain-containing protein \| chr3:2232760-2236913 FORWARD LENGTH=774	SoyBase	E_val: 0	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24104	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24104:SF9	Panther		JGI		ISS
UniRef100_G7L141	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 n=1 Tax=Medicago truncatula RepID=G7L141_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EB72	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EB72 related cluster n=1 Tax=unknown RepID=UPI000233EB72	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g30400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g124200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30400

Limit To All Plant Sequences

>Glyma19g30400.2   sequence type=transcript   gene model=Glyma19g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAAACCCGCTTCATAACTGTCCCTCGATTCGTATTCATACCCTATTGTGCTTGTTTCATTTCACTTTCTTAATCCTTAAACCTTAAATGTTAAAACCCATTACTAGTATACTGCAGCACCGTTCGTTCATTGAAACCACAAACTCCAAACAGAGATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGTTCCCTCATATTAATATTATGGGTTTGAAAACAATTCACTCTTCTTCTGATCAAGTGCACCTAATCCAGTTACTGATGACAGAAAATATAACATTCCCCATTTTGTTGTCTCGGCAGAAATTTCCTAAGATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGACAGTAGATTCAGCTGCACAGTTGCATTTTTTATTCCTATCACATGTTTTATTGTTTGTACTGTGTCATCACTTGGTGTTTAGTAACCTGTGTCTCATTGCTATTTATTAGCTGGAGAAGGTTATTTACCAAAATACATTTTATTATTTGAAAATTTGATTTCATGTGCTTGGCTTTTTTAGCCGGGACTATATTGTTGCCTGACGGTAGAGTCAGTTCTTGAAGACCTCAATGGCTTATAAATGAAGTGAGGGTTTCTCCTTTGGATATTTTTTTTCTTTGTGGTGTTGATAAACTGTATCCTCTAAGTTCAAACTGATAGGAGATTGATTCTTCCAAGATCATTAAAGTGAATTCCTCTTCTAATAAACA

Coding sequences of Glyma19g30400

Limit To All Plant Sequences

>Glyma19g30400.1   sequence type=CDS   gene model=Glyma19g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGCATACAGAAATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGA

>Glyma19g30400.2   sequence type=CDS   gene model=Glyma19g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGAGACATCGCCGCCTTACGAAGCAACTCTCCAAGTTTCTAACTCCCGTTCTCAACGCAGGTAACTGCTGTCAGCAATCTAGCAAAGCTTTAAACTTAGTGGCTTTGTCTATAATGCATATGCCTTCTGCTCAGAGTCCAATTGCTAATTGGACTCAAGTGAGAGGATTTCGTGAATACAGGATCTCAACAAAGTCTGATGAATTATGTGAACCTGCAACTGAAATTGATCTTTTGTCTTTCATTAAGGCTTCACTGGATGAGTTTGAAGGCACCCATCATTATTGGTTAAATAGATCTGACAACAACGACCAACTTTTTGGAGCTGATGGAATATTTTTAGTTCTTTCTGCAAGGGTTTTTGACTGTGGCATTAAGCTTGAAAAATTGAAGACAATTCAAAAGAGGTTCCCTCATATTAATATTATGGGTTTGAAAACAATTCACTCTTCTTCTGATCAAGTGCACCTAATCCAGTTACTGATGACAGAAAATATAACATTCCCCATTTTGTTGTCTCGGCAGAAATTTCCTAAGATAGAGAAAGGTGCATGCTACATATTGTTTAAAAATTTTAGAAGCCCAGTAATTTATCATGAGAAGGATGCGGGTCTTGAAATTCTAAGCAAAGCTGTTCAGGAGTTACAAGAGCAACCTGGTGGTGATTCTAAGTCACTTAATGTAGTGAGATGTACGTCTTTGAAGCAAGATGGGATCATTAAGGATGAATGTAGTTTTTCTCCTCTTCAGAATTTACTTCTATATTACCCAGGTTGCGTCTCCACAGATGAAAGTAATAACCGTCTCTTCTTTTCTGATTGCAATCATCATAGGATTCTTGTATCTGGTGGAAATGGAGAGATTCTGGATTGTATTGGCTCTTCCCCAGGATTTGAGGATGGAGATTTCGAATCTGCTAAATTAAGGCGTCCTGCAGGTTCATATTACCATGCTACTGAGGATTGCTTATATTTTGTGGATTCAGAGAACAATGCTATCAGGAAAGCTGACATGGGAGCACGGACAGTGGAGACTCTCTATCCTACAAGCGCCCCTAACAAGGGAGGTATTCAAATATGGAATTGGATCATGAGTAAGCTTGGTTTAGAAAGCAGTGGGAAGACCAGTGTTCAGGAAAGATCTGAAGTATTTGATTCTAAATTATATTTCCCATGGCATTTGCTGAAATCACCTGATGACACATTCTACATTATGGACCGAAGGTTTCAAACTTTGTGGGTCATGGATATCAATTCAGGAAAGATAGATGAAGTTTTTGAAGGTTCCCCTAGAATTCTTAAGATCTGTGGACAGCTAATCATGAAAAGTTTGTCCATCATAGATCAGATTCCTAGTGATTGGTTTCAACAGCAAACTAAGAATGGCTTTTTGCTGGGGGGCCTACAGCATTCTGATCTTTTATCTTCACTGGCAACTTTGCATAATCACATTTTCATTTGTGATCCAGTTGGACAGAGGATTCTGAAGGTTAATCGAGAATCTGGGGTTTGTTCAAACTTCTGGTTATCTAATTTAGGGATACTTGGATTACCTTATTGGCTGAATTTCCCCCTGGAGACATTTTATGCTGTGGCAAATGGACTTTCGGGTACACCAATTGATCATCTGCAACATTTTGATTTGCTACCAGGCAGAATTGACATAAATTTGAGGGTTGATCTTCCTATGGATATTGAGCTTGTTGTACCATTACAAGAATCCTGTATATGGTATCAAGCAAGAGGTGCAGCTACTGAAACTTCTGGAATGGATGAGGTTTCCTTAAACAAGAGTGGCCTTGCACAACAGTGGTATGATGAATTAGATGATCTTGCTGCTCCAAAACCTGAATCTGAAATAAATGTTCAAGATGATAATCTGGATAAAAAATCGGTAGTGGAAGATGAGAAAGTTCCCTTTAGCGTTGGAGTCTTTACTAGCCCCGGAACAAGTGAGGTTATAATTTATGCTGCACTGTATTGTAAACTTAGAAGTGTCCCAAAGTCAAATGAAGGCAACCGGGAGGAACATGCAGCAAGGATTCTTGATATTTTGAGCTCCAAGAGATCTGGGAAAATAGAGAGAGATTTATGGAAGGCATTTTTATTGCAATCTAAGGGTGATTTGAGAGATCTTATTTTCATGAAACCGCTACACATTAGATTAAGGTTAAGTTGTCAGGATCATCCAAAGGCTGATAACGGAAGGGATTTTATCTTAACAGACTCTTCAATTAAGGTGGACGTATTGCTCAATTGA

Predicted protein sequences of Glyma19g30400

Limit To All Plant Sequences

>Glyma19g30400.1   sequence type=predicted peptide   gene model=Glyma19g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRHRRLTKQLSKFLTPVLNAGNCCQQSSKALNLVALSIMHMPSAQSPIANWTQVRGFREYRISTKSDELCEPATEIDLLSFIKASLDEFEGTHHYWLNRSDNNDQLFGADGIFLVLSARVFDCGIKLEKLKTIQKRHTEIEKGACYILFKNFRSPVIYHEKDAGLEILSKAVQELQEQPGGDSKSLNVVRCTSLKQDGIIKDECSFSPLQNLLLYYPGCVSTDESNNRLFFSDCNHHRILVSGGNGEILDCIGSSPGFEDGDFESAKLRRPAGSYYHATEDCLYFVDSENNAIRKADMGARTVETLYPTSAPNKGGIQIWNWIMSKLGLESSGKTSVQERSEVFDSKLYFPWHLLKSPDDTFYIMDRRFQTLWVMDINSGKIDEVFEGSPRILKICGQLIMKSLSIIDQIPSDWFQQQTKNGFLLGGLQHSDLLSSLATLHNHIFICDPVGQRILKVNRESGVCSNFWLSNLGILGLPYWLNFPLETFYAVANGLSGTPIDHLQHFDLLPGRIDINLRVDLPMDIELVVPLQESCIWYQARGAATETSGMDEVSLNKSGLAQQWYDELDDLAAPKPESEINVQDDNLDKKSVVEDEKVPFSVGVFTSPGTSEVIIYAALYCKLRSVPKSNEGNREEHAARILDILSSKRSGKIERDLWKAFLLQSKGDLRDLIFMKPLHIRLRLSCQDHPKADNGRDFILTDSSIKVDVLLN*

>Glyma19g30400.2   sequence type=predicted peptide   gene model=Glyma19g30400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRHRRLTKQLSKFLTPVLNAGNCCQQSSKALNLVALSIMHMPSAQSPIANWTQVRGFREYRISTKSDELCEPATEIDLLSFIKASLDEFEGTHHYWLNRSDNNDQLFGADGIFLVLSARVFDCGIKLEKLKTIQKRFPHINIMGLKTIHSSSDQVHLIQLLMTENITFPILLSRQKFPKIEKGACYILFKNFRSPVIYHEKDAGLEILSKAVQELQEQPGGDSKSLNVVRCTSLKQDGIIKDECSFSPLQNLLLYYPGCVSTDESNNRLFFSDCNHHRILVSGGNGEILDCIGSSPGFEDGDFESAKLRRPAGSYYHATEDCLYFVDSENNAIRKADMGARTVETLYPTSAPNKGGIQIWNWIMSKLGLESSGKTSVQERSEVFDSKLYFPWHLLKSPDDTFYIMDRRFQTLWVMDINSGKIDEVFEGSPRILKICGQLIMKSLSIIDQIPSDWFQQQTKNGFLLGGLQHSDLLSSLATLHNHIFICDPVGQRILKVNRESGVCSNFWLSNLGILGLPYWLNFPLETFYAVANGLSGTPIDHLQHFDLLPGRIDINLRVDLPMDIELVVPLQESCIWYQARGAATETSGMDEVSLNKSGLAQQWYDELDDLAAPKPESEINVQDDNLDKKSVVEDEKVPFSVGVFTSPGTSEVIIYAALYCKLRSVPKSNEGNREEHAARILDILSSKRSGKIERDLWKAFLLQSKGDLRDLIFMKPLHIRLRLSCQDHPKADNGRDFILTDSSIKVDVLLN*

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