Glyma19g30380 - SoyBase

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Report for Sequence Feature Glyma19g30380

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37981839
stop:	37992891
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05070	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr5:1496896-1498441 FORWARD LENGTH=413	SoyBase	E_val: 4.00E-161	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1311	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7L4R2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase PFA4 n=1 Tax=Medicago truncatula RepID=G7L4R2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N8L2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30380

Paralog	Evidence	Comments
Glyma03g27420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g124000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30380

Limit To All Plant Sequences

>Glyma19g30380.3   sequence type=transcript   gene model=Glyma19g30380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAGAGAGGTCAAGGGGTGTGGGAAAATGAGTTTGTGAGAAAGAAAGGGAAGGAACTTTAGAAGGGAAATTTAATTCCCTTCTTGTTGTTCCCCTACCACGGCCAATTGATCTCGCGGTGAGGGACAATAATAATTAAAAATCACACGAAGAAGCAAAAATCTTAAGTCAATACAACGCATGCAACACATGCACGTGGGTTTTTGCCAACAACAAAGGTGATCATTGCAGCAACAACAACAACAGAGACTCAATATTATCGTATGCCATTATGTTCACCAACAACTCCTACCTCCAAAATAACAACTTGGCCTCTCCCTCCCCTTCCAGGATCGTCTCAATGGAATCTTCCAATGTTAAACAAAGGGTCTACCGTGTTTGGAAAGGAAACAATAAATTTCTATGTGGTGGAAGATTAGTTTTTGGTCAGGATGCATCATCTCTGTTTCTAACATCATTCTTGATTGGAGGTCCTGCAATAACATTTTGCATAAGAATGTTAGTATCACTAAAGGAAGAAGACCCTCACTTTAGCAACCCTGTACTAATTGGAGCAGTGATTCTCACAGTTTTGGTTGGATTTTATTTTTCTCTTCATGACATCTGGTAGAGATCCAGGAATTATTCCCAGAAATGCTCACCCACCTGAATTAGATGAACCATTAGACATAAACACACCATCCATGGAATGGATAAATAATAGGGCCCCTAATCTTAAGTTGCCCAGAGTGAAAGATGTGTTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCACGTAACTACCCATTCTTCATATTGTTCATATCATCATCAACCTTGTTGTGTATATACGTGTTTTCATTTTCCTGGGTTAACCTTCTTCGACAAGAAGGTAGATTGTGGGTCAACATATCACACGATGTCCTATCAGTTACTCTCATTGTATATTGCTTCATAGCTGTTTGGTTTGTGGGAGGGCTAACAGTTTTCCATCTTTATTTGATTTCGACTAATCAGACAACTTATGAGAATTTTCGGTACCGATATGATAAAAAGGAAAATCCATTCACAAAAGGAATATTGGCAAACTTCAAAGAACTTTCCTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGAATAATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATAACCTCAAAACATAAATTTGATATGGAAATGGGAACAATGTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGACATTGATGATCATCTAAAGAAGAAGGCAGGAGAAAAAGAAGTTGAATATGATATTTTTGTTCCTGCTGATCAATTGAAATCCAAAACTGAAGGAGCCAATGCTCATGAAGAGAAGCAATAATTCTAGCTGGTTTATTTGAAGATATGTTTGGGCATGTACTATAAGGGAATATTTGTAGGCAAAGTGGATTTCAAGGTTATAATGTTGATTTGCTTATGACTGGGGAGGCATGCAAAAAGGTATAGGTGGCTTGATTTATGATGGCAGTTGTAAAGTGAATGAAACCAATGATATGCTTAATGGAAACTCAGATACTTTCATCACTCAAAAAAGGAGAAAACAAATGACAAGTTACCAGAATTTGCACATGTTCACATATCAGTGCAAGACATATAAATGAATGAAGGCGCTAAATTAATGAATCATGAACAATGCTCGCCCTTTATTCTCTTTCTTAAACTTAGTATGGATTGTAGATCTTGTCTGCAATTCAAACTGCATTGTTAGTTTTGGTAAAAGAAAATTTGGAATGAAATGTTTGTTTCACAAAATCTTATCAAATTCTTAGGAATGTGGAGATGAGAATATAATATTCCCATGTTTGTTACAAGTTTTGAAAAACATTTTTGGGTATTATTAATTCCTAGAAATGTTATAATTTTCATTTCTACCATGTTTTTCAACATTTATATTCCCCATGAGAAAGGGTGGAAAAGTGATTGACATAGGAATGTG

Coding sequences of Glyma19g30380

Limit To All Plant Sequences

>Glyma19g30380.2   sequence type=CDS   gene model=Glyma19g30380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACCAACAACTCCTACCTCCAAAATAACAACTTGGCCTCTCCCTCCCCTTCCAGGATCGTCTCAATGGAATCTTCCAATGTTAAACAAAGGGTCTACCGTGTTTGGAAAGGAAACAATAAATTTCTATGTGGTGGAAGATTAGTTTTTGGTCAGGATGCATCATCTCTGTTTCTAACATCATTCTTGATTGGAGGTCCTGCAATAACATTTTGCATAAGAATGTTAGTATCACTAAAGGAAGAAGACCCTCACTTTAGCAACCCTGTACTAATTGGAGCAGTGATTCTCACAGTTTTGGATTTTATTTTTCTCTTCATGACATCTGGTAGAGATCCAGGAATTATTCCCAGAAATGCTCACCCACCTGAATTAGATGAACCATTAGACATAAACACACCATCCATGGAATGGATAAATAATAGGGCCCCTAATCTTAAGTTGCCCAGAGTGAAAGATGTGTTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCACGTAACTACCCATTCTTCATATTGTTCATATCATCATCAACCTTGTTGTGTATATACGTGTTTTCATTTTCCTGGGTTAACCTTCTTCGACAAGAAGGTAGATTGTGGGTCAACATATCACACGATGTCCTATCAGTTACTCTCATTGTATATTGCTTCATAGCTGTTTGGTTTGTGGGAGGGCTAACAGTTTTCCATCTTTATTTGATTTCGACTAATCAGACAACTTATGAGAATTTTCGGTACCGATATGATAAAAAGGAAAATCCATTCACAAAAGGAATATTGGCAAACTTCAAAGAACTTTCCTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGAATAATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATAACCTCAAAACATAAATTTGATATGGAAATGGGAACAATGTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGACATTGATGATCATCTAAAGAAGAAGGCAGGAGAAAAAGAAGTTGAATATGATATTTTTGTTCCTGCTGATCAATTGAAATCCAAAACTGAAGGAGCCAATGCTCATGAAGAGAAGCAATAA

>Glyma19g30380.3   sequence type=CDS   gene model=Glyma19g30380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCTGGTAGAGATCCAGGAATTATTCCCAGAAATGCTCACCCACCTGAATTAGATGAACCATTAGACATAAACACACCATCCATGGAATGGATAAATAATAGGGCCCCTAATCTTAAGTTGCCCAGAGTGAAAGATGTGTTAGTCAATGGCCACACAGTGAAGGTGAAATTTTGTGATACTTGCTTGTTATATCGTCCACCACGTGCTTCCCATTGCTCCATTTGCAATAATTGTGTTCAGAAGTTTGATCATCATTGTCCTTGGGTTGGTCAATGTATTGGATCACGTAACTACCCATTCTTCATATTGTTCATATCATCATCAACCTTGTTGTGTATATACGTGTTTTCATTTTCCTGGGTTAACCTTCTTCGACAAGAAGGTAGATTGTGGGTCAACATATCACACGATGTCCTATCAGTTACTCTCATTGTATATTGCTTCATAGCTGTTTGGTTTGTGGGAGGGCTAACAGTTTTCCATCTTTATTTGATTTCGACTAATCAGACAACTTATGAGAATTTTCGGTACCGATATGATAAAAAGGAAAATCCATTCACAAAAGGAATATTGGCAAACTTCAAAGAACTTTCCTGTGCTAAGATCCCAAGTAAATTAGTCAATTTTAGAGAATGGGTTACAATAGAGAATAATATTCAAGATGAATCCTATACTTCAGATCTTGAAAAAGGTTTTATAACCTCAAAACATAAATTTGATATGGAAATGGGAACAATGTATGGTAAGGATGGTATGCGAGTTCCTTCCATTTTGAAGGAATTGGATTACAATGACATTGATGATCATCTAAAGAAGAAGGCAGGAGAAAAAGAAGTTGAATATGATATTTTTGTTCCTGCTGATCAATTGAAATCCAAAACTGAAGGAGCCAATGCTCATGAAGAGAAGCAATAA

Predicted protein sequences of Glyma19g30380

Limit To All Plant Sequences

>Glyma19g30380.2   sequence type=predicted peptide   gene model=Glyma19g30380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTNNSYLQNNNLASPSPSRIVSMESSNVKQRVYRVWKGNNKFLCGGRLVFGQDASSLFLTSFLIGGPAITFCIRMLVSLKEEDPHFSNPVLIGAVILTVLDFIFLFMTSGRDPGIIPRNAHPPELDEPLDINTPSMEWINNRAPNLKLPRVKDVLVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIGSRNYPFFILFISSSTLLCIYVFSFSWVNLLRQEGRLWVNISHDVLSVTLIVYCFIAVWFVGGLTVFHLYLISTNQTTYENFRYRYDKKENPFTKGILANFKELSCAKIPSKLVNFREWVTIENNIQDESYTSDLEKGFITSKHKFDMEMGTMYGKDGMRVPSILKELDYNDIDDHLKKKAGEKEVEYDIFVPADQLKSKTEGANAHEEKQ*

>Glyma19g30380.3   sequence type=predicted peptide   gene model=Glyma19g30380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSGRDPGIIPRNAHPPELDEPLDINTPSMEWINNRAPNLKLPRVKDVLVNGHTVKVKFCDTCLLYRPPRASHCSICNNCVQKFDHHCPWVGQCIGSRNYPFFILFISSSTLLCIYVFSFSWVNLLRQEGRLWVNISHDVLSVTLIVYCFIAVWFVGGLTVFHLYLISTNQTTYENFRYRYDKKENPFTKGILANFKELSCAKIPSKLVNFREWVTIENNIQDESYTSDLEKGFITSKHKFDMEMGTMYGKDGMRVPSILKELDYNDIDDHLKKKAGEKEVEYDIFVPADQLKSKTEGANAHEEKQ*

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