Glyma19g30360 - SoyBase

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Report for Sequence Feature Glyma19g30360

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37961834
stop:	37968971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56930	AT	Annotation by Michelle Graham. TAIR10: DHHC-type zinc finger family protein \| chr3:21073805-21075873 FORWARD LENGTH=477	SoyBase	E_val: 1.00E-163	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1311	KOG	DHHC-type Zn-finger proteins	JGI		ISS
PTHR22883	Panther	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	JGI		ISS
PF01529	PFAM	DHHC zinc finger domain	JGI		ISS
UniRef100_G7L4R1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyltransferase AKR1 n=1 Tax=Medicago truncatula RepID=G7L4R1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8L1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8L1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30360

Paralog	Evidence	Comments
Glyma03g27410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g123900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30360

Limit To All Plant Sequences

>Glyma19g30360.1   sequence type=CDS   gene model=Glyma19g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGGAATAAAATTCCGCAAATGGGGGGTTCTCCTTCTGGCAATTCGGTTCACAAACAAAGAAGGCTTTATCAAGTTTGGAGGGGAGGCAACAAGTTTTTCTGTGGTGGGAGGCTGGTTTTTGGTCCGGATGTAGCTTCCCTGTTTCTTACAACATTCCTAATTGCTGGACCTGCAATTGCATTTTGTGTAAAGATATATCTTAAAATCAAGAAGACCGATGGTCTTATTCATGATTACTGGTTTCCTGTATTGATTGTGGGTTCAATTCTCACTGTTTTGGATTTAATATTCCTCCTTTTGACTTCTGGGAGAGATCCTGGAATTGTCCCCAGAAATTCAAGACCTCCTGAATTTGATGAAACATGTGATATACCTACCCCTTCCATGGAGTGGATTAATGGCACAACCCCTCATCTGAAACTACCTCGAACTAAAGATGTTGTTGTTAATGGTCACATAGTGAAAGTAAAGTTCTGTGATACGTGCTTGCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATACGAAACTATCGGTACTTCTTCATGTTTATTTCGACATCAACCAGTTTGTGCATATATGTCTTCGCGTTCTCTTGTATCAATATTGCCCACAGTGGCATTTGGAAGACAATAACACATGATTATGTATCAGATTTTCTGATAATATACTGCTTCATAGCTGTCTGGTTTGTTGGTGGCCTCACAGCTTTCCATTTCTATCTCATTTGTACAAATCAGACAACTTATGAGAACTTCCGATATCAATATGATAAGAAGGGGAACCCATTCAATAGGGGATCATGCAGAAATCTTAAAGAAACACTTTGTTCCAGTATTCCCCATTCGAAGAATAATTTCCGATCATTTGTTGTGGAGGATGAACTTATGATGGTCGGGTCTCTGACTCCAAATATTGGGGATGGAATTTTGACCCCAAAGGAGAAAATTGATATTGAAATGGGATCTATGCGTGCAGAAGATGGACGTATGCCTGTTCCTGAACTTCTGCGAAATTTTGATTTTGATAATTTTGATGGTGACATGAAGTTTGCAGATGACGACGGGCAGCCTTCTTTTGATCCATTCTACAGTATTGAAGATGATGCAAAAGATTCAGCCCGAACATCCATTCAAACAGTTCTGAATTTCCAAAGCATAACTGAAGATGTAATGGAAGAGTCTGTGCAAAGCTCCCATGCTGGAGGAAACGTCAGAGAATCTACCCAAAAGCACTTTACTGGTGATGGAACATATACAATCAAGGAAACCGATGACAGGAATCACTCACATTAA

Predicted protein sequences of Glyma19g30360

Limit To All Plant Sequences

>Glyma19g30360.1   sequence type=predicted peptide   gene model=Glyma19g30360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGNKIPQMGGSPSGNSVHKQRRLYQVWRGGNKFFCGGRLVFGPDVASLFLTTFLIAGPAIAFCVKIYLKIKKTDGLIHDYWFPVLIVGSILTVLDLIFLLLTSGRDPGIVPRNSRPPEFDETCDIPTPSMEWINGTTPHLKLPRTKDVVVNGHIVKVKFCDTCLLYRPPRTSHCSICNNCVQRFDHHCPWVGQCIGIRNYRYFFMFISTSTSLCIYVFAFSCINIAHSGIWKTITHDYVSDFLIIYCFIAVWFVGGLTAFHFYLICTNQTTYENFRYQYDKKGNPFNRGSCRNLKETLCSSIPHSKNNFRSFVVEDELMMVGSLTPNIGDGILTPKEKIDIEMGSMRAEDGRMPVPELLRNFDFDNFDGDMKFADDDGQPSFDPFYSIEDDAKDSARTSIQTVLNFQSITEDVMEESVQSSHAGGNVRESTQKHFTGDGTYTIKETDDRNHSH*

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