Report for Sequence Feature Glyma19g30350
Feature Type: gene_model
Chromosome: Gm19
Start: 37957536
stop: 37960675
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g30350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G56940 AT
Annotation by Michelle Graham. TAIR10: dicarboxylate diiron protein, putative (Crd1) | chr3:21076594-21078269 FORWARD LENGTH=409
SoyBase E_val: 0 ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0006636 GO-bp
Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process
SoyBase N/A ISS
GO:0009416 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light stimulus
SoyBase N/A ISS
GO:0009657 GO-bp
Annotation by Michelle Graham. GO Biological Process: plastid organization
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010207 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosystem II assembly
SoyBase N/A ISS
GO:0015979 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis
SoyBase N/A ISS
GO:0015994 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process
SoyBase N/A ISS
GO:0015995 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process
SoyBase N/A ISS
GO:0019216 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process
SoyBase N/A ISS
GO:0019288 GO-bp
Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
SoyBase N/A ISS
GO:0019344 GO-bp
Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process
SoyBase N/A ISS
GO:0031408 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009534 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0009706 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
GO:0046914 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding
SoyBase N/A ISS
GO:0048529 GO-mf
Annotation by Michelle Graham. GO Molecular Function: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
SoyBase N/A ISS
PF02915 PFAM
Rubrerythrin
JGI ISS
UniRef100_B9SCF8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SCF8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N8L0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8L0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g30350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g30350
Paralog Evidence Comments
Glyma03g27380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g30350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g123800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g30350
Coding sequences of Glyma19g30350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g30350.1 sequence type=CDS gene model=Glyma19g30350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCCTCCTTAGTCCTCAACCACCCTTCTTCACTTCCCTTCACATTGCAGAAGAGATGGCTCTTGTGAAACCAATTTCCAATGTCACTCCCAAATTTGGCAGCAGCCCCAGAATGGGATCACACTCCAAATTCAGCACCATAATAAGAATGTCTGCCACTGCCACCCCACCACCACCACCCTCCACCTCCACAAAGCCAGCTGCAAGCAACAAGAAGGGCAACATCAAGGAGACCCTCTTGACTCCAAGGTTCTACACCACTGACTTTGATGAGATGGAGACCCTCTTCAACACTGAGATCAACAAGAACCTCAACCAGGATGAGTTTGAGGCACTGCTCCAGGAGTTCAAGACTGACTACAACCAGACACACTTTGTGAGGAACAAGGAGTTCAAGGAAGCTGCTGACAAACTTGAGGGGCCACTCAGGCAGATCTTTGTGGAGTTCCTTGAGAGGTCCTGCACTGCTGAATTCTCTGGCTTCCTTCTCTACAAAGAGCTTGGAAGGAGGCTCAAGAAAACCAACCCCGTGGTGGCAGAGATTTTCTCTCTGATGTCTAGGGATGAAGCCAGGCATGCTGGGTTTTTGAACAAAGGTTTATCTGATTTTAATTTGGCTCTGGACTTGGGTTTCTTGACCAAAGCTAGAAAATACACATTTTTCAAGCCCAAGTTTATCTTCTATGCTACATACTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAGGCCAACCCCGAGTTCCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAGGATGAGAACAGGCATGGAGATTTCTTCTCTGCCCTGATGAAGGCACAGCCACAATTTCTAAATGACTGGAAGGCAAAGTTGTGGTCTCGATTCTTCTGTCTATCGGTTTATGTTACAATGTATCTCAATGATTGCCAACGTACAGCTTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGACAAACCGCACAACTGCTAGGATTTTCCCAGCTGTTCTTGATGTTGAAAACCCAGAGTTCAAGCGGAAGTTGGACCGGATGGTGGAGATAAACGAGAAGATTATTGCTGTTGGGGAGAGTGATGACATAGCGGTGGTGAAGAACTTGAAGAGGATCCCACTGGTTGCTGCATTGGTGTCTGAACTCTTGGCAACATATCTAATGCCTCCAATTGAGTCAGGGTCTGTAGATTTGGCAGAGTTTGAACCACAACTTGTGTACTGA
Predicted protein sequences of Glyma19g30350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g30350.1 sequence type=predicted peptide gene model=Glyma19g30350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLLLSPQPPFFTSLHIAEEMALVKPISNVTPKFGSSPRMGSHSKFSTIIRMSATATPPPPPSTSTKPAASNKKGNIKETLLTPRFYTTDFDEMETLFNTEINKNLNQDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINEKIIAVGESDDIAVVKNLKRIPLVAALVSELLATYLMPPIESGSVDLAEFEPQLVY*