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Report for Sequence Feature Glyma19g30305

Feature Type:gene_model
Chromosome:Gm19
Start:37940444
stop:37947467
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30305
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41050AT Annotation by Michelle Graham. TAIR10: PQ-loop repeat family protein / transmembrane family protein | chr2:17123388-17125622 REVERSE LENGTH=376 SoyBaseE_val: 5.00E-69ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR16201Panther FAMILY NOT NAMED JGI ISS
PTHR16201:SF8Panther SUBFAMILY NOT NAMED JGI ISS
PF04193PFAM PQ loop repeat JGI ISS
UniRef100_G7L3T0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Membrane protein, putative n=1 Tax=Medicago truncatula RepID=G7L3T0_MEDTR SoyBaseE_val: 2.00E-105ISS
UniRef100_UPI0002337895UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337895 related cluster n=1 Tax=unknown RepID=UPI0002337895 SoyBaseE_val: 8.00E-173ISS

Expression Patterns of Glyma19g30305
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30305 not represented in the dataset
Glyma19g30305 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30305
ParalogEvidenceComments
Glyma03g27331 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30305 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g123500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30305
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g30305
>Glyma19g30305.1   sequence type=CDS   gene model=Glyma19g30305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTGTTTGAGAACTCCACACTCTCTCTGTGGTGTCAAAGCAATCAGCACTGCTCGCAATTGGCCAAAGAGCATATGGGAAGTGTGAGGGAGACACCTTCTTTCTTGTTGGGTTTAATCAATGTCATTGTTTGGGTTGTTGCTGAGATACCTCAAATAATTCCAAACTATAGAACAAAGTCTGCTGAGGGTCTCTCTGTCACTTTCTTGGTCACATGGATAATTGGAGATTTATTCAACCTCTTTGGATGCATGCTGGAACCTGCAACTGTTGAGACATTCACAAAAGTTGGACAATTGGAAAAGGCCAGTGATGCTGAACAGAGTATTCAAGTTGACGGTTCAAATAGAGGCACCGGTCTGAGTTCTCCTATTCCTCTTCCAGCACGTCCTCAAAGAATTTCTACTGGAAGAGAATTATTCTACCAGTCAGCAAGATATTTGTCAAAGAGTCATACTCCAACAGCGGGATCCATCTTAGCACAGAAACCTCCTACTTTAGATTCTATACAAGAGAGCTTGCTTGCTTTAAAGATGAAGAATACTCTTTGTTTGGTTTCAACATTAAATTTTCTTGGTGTTATCAATCTACTTCAACCACTAGATGAAAGAATTAATTCTATGACCTCAAACCCACGACAACAACTTGTGATTTATATGTTTCTGGAAGCAGTAGCGTTGGAACCTTCTTTGGTTGGGCAATGGACATTTATATATTTGAGTGGAAGACTGTCTCAAATTTGTTTAAATGGACTCAATCCTTTGATGTTCCTGTTTGCTGTAATTGGGAATGCCACTTATGTAGCGAGTATAGTTGTGATCAGCCTGGATTGGTCAAAAATCAGACCGAATTTGCCATGGCTAGTAGATGCTGGGGGATGTGTCCTTCTCGATTTTTTTGTATCCTTTTTTTATATATTTATCTCTACCAAATTATTCTTGTTAGAGAGAAATGGATTCTTGGTGGTCAAAGTTATATATGTAGGATAA
Predicted protein sequences of Glyma19g30305
>Glyma19g30305.1   sequence type=predicted peptide   gene model=Glyma19g30305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVFENSTLSLWCQSNQHCSQLAKEHMGSVRETPSFLLGLINVIVWVVAEIPQIIPNYRTKSAEGLSVTFLVTWIIGDLFNLFGCMLEPATVETFTKVGQLEKASDAEQSIQVDGSNRGTGLSSPIPLPARPQRISTGRELFYQSARYLSKSHTPTAGSILAQKPPTLDSIQESLLALKMKNTLCLVSTLNFLGVINLLQPLDERINSMTSNPRQQLVIYMFLEAVALEPSLVGQWTFIYLSGRLSQICLNGLNPLMFLFAVIGNATYVASIVVISLDWSKIRPNLPWLVDAGGCVLLDFFVSFFYIFISTKLFLLERNGFLVVKVIYVG*






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