Report for Sequence Feature Glyma19g30290
Feature Type: gene_model
Chromosome: Gm19
Start: 37935375
stop: 37937612
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g30290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G41120 AT
Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr2:17141454-17142419 REVERSE LENGTH=261
SoyBase E_val: 6.00E-82 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PF03745 PFAM
Domain of unknown function (DUF309)
JGI ISS
UniRef100_I1N8K6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8K6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2RB12 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2RB12_ORYSJ
SoyBase E_val: 3.00E-66 ISS
Expression Patterns of Glyma19g30290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g30290
Paralog Evidence Comments
Glyma03g27320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g30290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g123400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g30290
Coding sequences of Glyma19g30290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g30290.1 sequence type=CDS gene model=Glyma19g30290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTTCTTCCTTCTTCTCTCAGAACCCTTTTCCACATCTCATCTCAACGTTCTCTTCCTAATTCCTTTCACAACTCCATCACTCTTGCATCATCTTTCAATCCACTGACTCATTCAAAGCAGCACCTGAACCACAGAGGCTGCAACTCCAAGCTCTTGGCTATTTCTTACAGGTATTTCATTGAAGAAGAAGAAGAAGATGATGAAAACAACAACTTTGATGAAGCAGTGGCTCTCTTCAATGGAGGAGAGTACTACAAATGCCATGACTATCTTGAAGCCCTTTGGCTCAATGCTGAAGAGCCCACCAGAACTCTCATTCATGGAATACTGCAATGTGCCGTGGGTTTCCACCACCTCTTCAACCAGAACCACAGAGGAGCCATGATGCAATTGGGGGAAGGACTATGTAAACTGAGAAAGATGGAATTCTCAAATGGGCCGTTTCAAAAGTTTGAGAAAGACATTTCAGCTGTTCTAGATTTTATCTACCAGACTCAGATAGAATTAGCTGCATGTAGTGAGGATATGTGTGTTGCAATGGATCGATCAGAAAGGTCTTACCAACTTCTAGGGGAATATGCTTCAGGGCAGCGTGTGTATGATCTAGAACTTTGTAGTGATGCATCAGTGTACATTGTGTTCTGCCCTCAAGGCTCTAATAATGGTGGTGCCACCGAAGCCCCAAGGGTGAAGCTTCCAACGCTTAAGGCTACCACAGAACATCTTGTGGCCTATGAATAA
Predicted protein sequences of Glyma19g30290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g30290.1 sequence type=predicted peptide gene model=Glyma19g30290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFLPSSLRTLFHISSQRSLPNSFHNSITLASSFNPLTHSKQHLNHRGCNSKLLAISYRYFIEEEEEDDENNNFDEAVALFNGGEYYKCHDYLEALWLNAEEPTRTLIHGILQCAVGFHHLFNQNHRGAMMQLGEGLCKLRKMEFSNGPFQKFEKDISAVLDFIYQTQIELAACSEDMCVAMDRSERSYQLLGEYASGQRVYDLELCSDASVYIVFCPQGSNNGGATEAPRVKLPTLKATTEHLVAYE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
