Glyma19g30260 - SoyBase

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Report for Sequence Feature Glyma19g30260

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37911027
stop:	37915560
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56490	AT	Annotation by Michelle Graham. TAIR10: HIS triad family protein 3 \| chr3:20941532-20943129 FORWARD LENGTH=147	SoyBase	E_val: 2.00E-63	ISS
GO:0006790	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process	SoyBase	N/A	ISS
GO:0009150	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide metabolic process	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005080	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase C binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0047627	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenylylsulfatase activity	SoyBase	N/A	ISS
KOG3275	KOG	Zinc-binding protein of the histidine triad (HIT) family	JGI		ISS
PTHR23089	Panther	HISTIDINE TRIAD (HIT) PROTEIN	JGI		ISS
PF01230	PFAM	HIT domain	JGI		ISS
UniRef100_G7KP65	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 14 kDa zinc-binding protein n=1 Tax=Medicago truncatula RepID=G7KP65_MEDTR	SoyBase	E_val: 3.00E-62	ISS
UniRef100_I1N8K4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8K4_SOYBN	SoyBase	E_val: 9.00E-75	ISS

Expression Patterns of Glyma19g30260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g30260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g123100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30260

Limit To All Plant Sequences

>Glyma19g30260.2   sequence type=transcript   gene model=Glyma19g30260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTCTATTCTCTGCACGTTTTCATCCTCCATTCTTCTCTCTCTGTTTAGTATTTGCCTGTCTTGCAAAATTCCTTTGTGGTTTGTCTGTTATATGTTCTGATTTCCTCTGTCATTGTGCAAAAACCCTAAAAAGTTTACTTTTTTATGTTGTTAGGCTTAGAGGGTAGTAAAATTTTATTAGCTTGCTTTCGGCATAGTGGAAATGCGATATCACATGGCCACAGAAATCGGCGAGTTTCTTTGTGGGTATCATTTGCTGGTGATTCTGTGAAGATATATGCCCGATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAAAATGTGAAAAGATTCGTAGTGTCACGGTATGCCTTTGTGCAGACCTGCAGTTATACTCTGCTTATGCAATCTATAAATAATGGTTTTAATTTTTAAATGACTAAGTAGTGTCTTGATGTTACACCAAGAAATTATGATGTTGTGTTAGATGGCCTATACTAATTATGTTTAAACTAGTGTGTCAAATTTATGCTAAAACCATATTCCAAAGTCGTTTATGGATTATGGTTGTTGATGGCGTTTCAGTGTTTCCTATGCTATGTTATAATTCCTGCACCAACATTAGCAGAATCATGTTTGTGGATAATGAGATACTGCTGGGCACATTTTTTTGCATGTGTGGTTTTGTTTTGTTTTTGAATTGAATTGAGAGGTGTGGGGGTGAGTTTGAGTTTATTACTGGTTTTCATCTTGTTACAAACTTGAAATTATTGACAATAAATCTCAATTTAGTTTGGGTGTTTTTGT

Coding sequences of Glyma19g30260

Limit To All Plant Sequences

>Glyma19g30260.1   sequence type=CDS   gene model=Glyma19g30260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGAGACAGAAGCTGCTCTTGCTGCCACTCCCTCTGATGGTCCCACCGTATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAA

>Glyma19g30260.2   sequence type=CDS   gene model=Glyma19g30260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTAGGCTTAGAGGGTAGTAAAATTTTATTAGCTTGCTTTCGGCATAGTGGAAATGCGATATCACATGGCCACAGAAATCGGCGAGTTTCTTTGTGGGTATCATTTGCTGGTGATTCTGTGAAGATATATGCCCGATTTGACAAGATCATCAATAAGGAAATTCCTTCTACTGTGGTCTATGAGGATGATAAGGTCCTTGCCTTTAGGGACATAGATCCACAAGCTCCTACCCATATTCTAATCATTCCTAAAGTTAGGGATGGGTTAACTGGTCTGTCCAAGGCTGAGGAGAGGCACTGTGAGATTCTAGGTCGACTTTTGTGCACTGCTAAGCTGGTTGCAAAGCAAGAAGGTCTTGATGATGGCTTCAGGATTGTAATTAATGATGGACGAGACGGGGGCCAATCAGTTTACCACATTCATGTGCACCTCATTGGGGGACGACAGATGGGCTGGCCCCCTTTCTAA

Predicted protein sequences of Glyma19g30260

Limit To All Plant Sequences

>Glyma19g30260.1   sequence type=predicted peptide   gene model=Glyma19g30260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASETEAALAATPSDGPTVFDKIINKEIPSTVVYEDDKVLAFRDIDPQAPTHILIIPKVRDGLTGLSKAEERHCEILGRLLCTAKLVAKQEGLDDGFRIVINDGRDGGQSVYHIHVHLIGGRQMGWPPF*

>Glyma19g30260.2   sequence type=predicted peptide   gene model=Glyma19g30260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLGLEGSKILLACFRHSGNAISHGHRNRRVSLWVSFAGDSVKIYARFDKIINKEIPSTVVYEDDKVLAFRDIDPQAPTHILIIPKVRDGLTGLSKAEERHCEILGRLLCTAKLVAKQEGLDDGFRIVINDGRDGGQSVYHIHVHLIGGRQMGWPPF*

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