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Report for Sequence Feature Glyma19g30251

Feature Type:gene_model
Chromosome:Gm19
Start:37896451
stop:37903254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g30251
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41060AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17127138-17128493 FORWARD LENGTH=451 SoyBaseE_val: 7.00E-160ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG4205 KOG RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 JGI ISS
PTHR24011Panther FAMILY NOT NAMED JGI ISS
PTHR24011:SF5Panther SUBFAMILY NOT NAMED JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_I1N8K3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8K3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8LLE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein AKIP1 n=1 Tax=Vicia faba RepID=Q8LLE6_VICFA SoyBaseE_val: 2.00E-174ISS

Expression Patterns of Glyma19g30251
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30251 not represented in the dataset
Glyma19g30251 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30251
ParalogEvidenceComments
Glyma03g27290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30251 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g122900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g30251
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g30251
>Glyma19g30251.1   sequence type=CDS   gene model=Glyma19g30251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAGCGAAAGGTAGCACCGAAATCTTCTGTATCCGCCGAGCCCCCGCTGAAGCAACACCAACCAAAACCCGAAAATGCCGCTCAGGAATACGAAGAAGAGGTCGAAGAGGAAGTTGAGGAAGAAGAGGTAGAGGAAGAGGTCGAAGAGGAAGAAGAAGAAGAGGAGGACGAAGAGGACGAGGAAGAAGAAGAAGAAGACCAAAAAGACCAATACCAGCACCAACAACAACAGCAAGACGAAGACGACGACCCGATCTCCAAGCTTCTGGAACCGTTGAGCAAGGACCAGCTCCTCATCCTTCTCTGCGAGGCGGCGGCCAAGCACCAAGACGTGGCTGAGAGGATCCGAAGGGCGGCCGACGAGGATCCGGTGCACCGGAAGATATTTGTCCACGGATTGGGCTGGGACACAACCGCCGGAACCCTAATCAGTTCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATTCTCTTCAAGACCCGCCGCGGCGCGCGCAACGCCCTCAAGGAGCCGCAAAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCATCCATCGGTCCGGTTAGCAACCCGCCGCAGACGGCACCGCCGGCGGTGGCGGCTCCGTCGTCGTCGGTTTCGGAGTACACACAGAAGAAGATCTACGTGAGCAACGTCGGTGCGGATCTGGATCCGCAGAAGCTTCTCGCGTTTTTCTCGCGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGCTACCGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTCCAGAGAGTGCAAGGAGAGCATTGGAGGAGCCTCATAAGGATTTTGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGGCCGGGAAGTTGCAGCAGCACGGGAATGTGAATGCCCAGGCGCAGCGGGCCCAGTTTCAGAGGAATGGTAGTGTTGGTACTAATGCTGCTGCTGGGTATGGTGGTGGTGCGGCGTTGCAGCCCGGGCACTTGATGGCCCCGGCTGGGCCGGGGATTGGGTTTAATCAGTCTGCTGCTGCTGCGCAGGCCGCACTGAATCCGGCAATGGCGCAGGCGTTGACCGCGCTGCTGGCATCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCAGTTAACCCTGGTGTGCCTTCTGCAGGGGCTGCGGTGCAGGGTGGTTACAGTGCTCAACCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTGCAGTTGGCGTATCCGAATCAGAATCAGAATCAGCAGATAGGGCAGGGTGGGTCCGGAAGAGGGCAATATGGTGGTGGATCTGCGCCCTACATGGGGCACTAG
Predicted protein sequences of Glyma19g30251
>Glyma19g30251.1   sequence type=predicted peptide   gene model=Glyma19g30251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKRKVAPKSSVSAEPPLKQHQPKPENAAQEYEEEVEEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQHQQQQQDEDDDPISKLLEPLSKDQLLILLCEAAAKHQDVAERIRRAADEDPVHRKIFVHGLGWDTTAGTLISSFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIGPVSNPPQTAPPAVAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYRSPESARRALEEPHKDFEGHILHCQKAIDGPKAGKLQQHGNVNAQAQRAQFQRNGSVGTNAAAGYGGGAALQPGHLMAPAGPGIGFNQSAAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPSAGAAVQGGYSAQPNISPGVVGGYGNQVGLQLAYPNQNQNQQIGQGGSGRGQYGGGSAPYMGH*






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