Glyma19g30220 - SoyBase

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Report for Sequence Feature Glyma19g30220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37878684
stop:	37882966
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01060	AT	Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein \| chr2:73456-74902 REVERSE LENGTH=286	SoyBase	E_val: 5.00E-71	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1N8J6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8J6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HUG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myb family transcription factor APL n=2 Tax=Medicago truncatula RepID=Q2HUG9_MEDTR	SoyBase	E_val: 2.00E-143	ISS

Expression Patterns of Glyma19g30220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30220

Paralog	Evidence	Comments
Glyma03g00590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g122700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30220

Limit To All Plant Sequences

>Glyma19g30220.2   sequence type=transcript   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGGATTCATAACGTCTCTCTCTCTCTCAAATCCAATCATTTCCTGAAAGACAAAAACAAAAACAAAATAAAAATCGCGTTCAGACACACTCACAATTCACACACCAACACCACCAATCCCCAATCTCTAACTTTTCCCGAGAAAATTATAATTTCCATTCTCTTTTCTCCCTCAGATTCCCGGAAAATATAGTATTCACAACGTTATATTTTGGCACCGCCAAGCTCCAATTCAATCCGTCGTCGTTTTCGCGAATTCCGAATGCGTCGACTTCGGGTTGGAGAATGAGTTCTCCGTGCTCTTCTTGTGGCTGTTTGTTGGCGTTCTTGGATCTCTCTTCAAACCCTCCACAGTCTCCTGTCCAATTTTAACTCTCTTAGTCAGTTTAACTATGTATCACACAAAGAAATTTTCACCGGCTAGCATGGTGCCGCATAAATCTCAAGGTGGTGCTGAACAGCTTGCAAATGCTGGGGTTTTGGGTGGATCGGCTGTAAAAACTGCTGCACCTTCTGGGGGAAGTGGGAAGCAACGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAAGAACTAGGATCCATTTGTAGGTCAATGTGTCTCATTGTAATGTTTAGTGTATTTTTCTGGTAGAAAATACAAATCATGCTTTGTAAATTATATTTCACGCAATCCATTTGTACATATTAATGTAGATATAGATGCATTCTTCTCTCCTGGTTTGAAAGTCATAGACACTGCACTCTCCATCCAACAGAAATGCTTTGACTTGCATTACACGTGTGGTCATGGATGATGAATGTTGGGTGCATGATACTTATCGATGTTCAAGTTATGATCTAAGTCAATATCAAAGGTATCAATTAGCTGGTGACGACATTGTTTGATCCTTATAGCCAACCTAATCAGGGGAGAAAGGACTTGGTTCTTATTGTTGGAGATAGTAATGACCAGCTTCCCTTTATATTAGTTATTTAATTTAATTATGTATTTTCTTCGAGGTTAATGTTGTTCAGCATATTTATACTTGTGATTGTGATGCTATCTAACCTATGAGGCTATGAGTAATACTATATCTTCTTTCTCCGTAAAGTATGAAAATATTCAACCAAAAAAAAAAACAAAACTGTACTACTGGATGTATTGTGATTTGTGAGTGTAAGAATTCTTATATTG

>Glyma19g30220.5   sequence type=transcript   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTTATTTTTATTTTTACCTATATTCCTGGAAACTTTTTAAATATTTTTAATTAATCATGGCAGGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGGTAAAGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAAGAACTAGGATCCATTTGTAGGTCAATGTGTCTCATTGTAATGTTTAGTGTATTTTTCTGGTAGAAAATACAAATCATGCTTTGTAAATTATATTTCACGCAATCCATTTGTACATATTAATGTAGATATAGATGCATTCTTCTCTCCTGGTTTGAAAGTCATAGACACTGCACTCTCCATCCAACAGAAATGCTTTGACTTGCATTACACGTGTGGTCATGGATGATGAATGTTGGGTGCATGATACTTATCGATGTTCAAGTTATGATCTAAGTCAATATCAAAGGTATCAATTAGCTGGTGACGACATTGTTTGATCCTTATAGCCAACCTAATCAGGGGAGAAAGGACTTGGTTCTTATTGTTGGAGATAGTAATGACCAGCTTCCCTTTATATTAGTTATTTAATTTAATTATGTATTTTCTTCGAGGTTAATGTTGTTCAGCATATTTATACTTGTGATTGTGATGCTATCTAACCTATGAGGCTATGAGTAATACTATATCTTCTTTCTCCGTAAAGTATGAAAATATTCAACCAAAAAAAAAAACAAAACTGTACTACTGGATGTATTGTGATTTGTGAGTGTAAGAATTCTTATATTG

>Glyma19g30220.6   sequence type=transcript   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGGATTCATAACGTCTCTCTCTCTCTCAAATCCAATCATTTCCTGAAAGACAAAAACAAAAACAAAATAAAAATCGCGTTCAGACACACTCACAATTCACACACCAACACCACCAATCCCCAATCTCTAACTTTTCCCGAGAAAATTATAATTTCCATTCTCTTTTCTCCCTCAGATTCCCGGAAAATATAGTATTCACAACGTTATATTTTGGCACCGCCAAGCTCCAATTCAATCCGTCGTCGTTTTCGCGAATTCCGAATGCGTCGACTTCGGGTTGGAGAATGAGTTCTCCGTGCTCTTCTTGTGGCTGTTTGTTGGCGTTCTTGGATCTCTCTTCAAACCCTCCACAGTCTCCTGTCCAATTTTAACTCTCTTAGGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAAGAACTAGGATCCATTTGTAGGTCAATGTGTCTCATTGTAATGTTTAGTGTATTTTTCTGGTAGAAAATACAAATCATGCTTTGTAAATTATATTTCACGCAATCCATTTGTACATATTAATGTAGATATAGATGCATTCTTCTCTCCTGGTTTGAAAGTCATAGACACTGCACTCTCCATCCAACAGAAATGCTTTGACTTGCATTACACGTGTGGTCATGGATGATGAATGTTGGGTGCATGATACTTATCGATGTTCAAGTTATGATCTAAGTCAATATCAAAGGTATCAATTAGCTGGTGACGACATTGTTTGATCCTTATAGCCAACCTAATCAGGGGAGAAAGGACTTGGTTCTTATTGTTGGAGATAGTAATGACCAGCTTCCCTTTATATTAGTTATTTAATTTAATTATGTATTTTCTTCGAGGTTAATGTTGTTCAGCATATTTATACTTGTGATTGTGATGCTATCTAACCTATGAGGCTATGAGTAATACTATATCTTCTTTCTCCGTAAAGTATGAAAATATTCAACCAAAAAAAAAAACAAAACTGTACTACTGGATGTATTGTGATTTGTGAGTGTAAGAATTCTTATATTG

Coding sequences of Glyma19g30220

Limit To All Plant Sequences

>Glyma19g30220.1   sequence type=CDS   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACACAAAGAAATTTTCACCGGCTAGCATGGTGCCGCATAAATCTCAAGGTGGTGCTGAACAGCTTGCAAATGCTGGGGTTTTGGGTGGATCGGCTGTAAAAACTGCTGCACCTTCTGGGGGAAGTGGGAAGCAACGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGGTAAAGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAA

>Glyma19g30220.2   sequence type=CDS   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCACACAAAGAAATTTTCACCGGCTAGCATGGTGCCGCATAAATCTCAAGGTGGTGCTGAACAGCTTGCAAATGCTGGGGTTTTGGGTGGATCGGCTGTAAAAACTGCTGCACCTTCTGGGGGAAGTGGGAAGCAACGTTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACACAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAA

>Glyma19g30220.5   sequence type=CDS   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAGCAACACCAAAAGGTGTTCTTAGAGTGATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGGTAAAGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAA

>Glyma19g30220.6   sequence type=CDS   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTTCCTGGACTGACCATTTATCATGTTAAAAGTCATTTACAGAAATATCGCCTTGCAAAATACTTGCCTGAATCACCAGCTGATGACCCTAAAGATGAGAAGAGGATGTCTGGGGACAGCATTTCTGGTGCAGATTCTTCCTCGGGAATGCCAATCAATGATGCCCTAAGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAGCAGCTTGAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCACAGGGTAAATACTTGCAAAAGATCATAGAGGAACAGCAGAAATTAGGTAGTACCTTGACAACCTCGGAAACCCTCCCTTTGTCCCATGATAAGCAAAATCATCCTCAGTCAGAGGCTTCTGGATCTAGTGATGCCCTTGCAAGCACTGTGTCTCCACTTAAAAAACAGAGAATCGATGATGGTTCCAAGGAAGGCTTCACTGCTTCCCAAGTAAGAAAGAATGACAATGTTGGTCAGTTGGATCCAAACTTATATGATGATGCTGGGTTTGGATTTGATTTGGAGACAAAAAAGGATGAAGATAATGAGAGTGGACAGTAA

Predicted protein sequences of Glyma19g30220

Limit To All Plant Sequences

>Glyma19g30220.1   sequence type=predicted peptide   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHTKKFSPASMVPHKSQGGAEQLANAGVLGGSAVKTAAPSGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDPKDEKRMSGDSISGADSSSGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEASGSSDALASTVSPLKKQRIDDGSKEGFTASQVRKNDNVGQLDPNLYDDAGFGFDLETKKDEDNESGQ*

>Glyma19g30220.2   sequence type=predicted peptide   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYHTKKFSPASMVPHKSQGGAEQLANAGVLGGSAVKTAAPSGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADDPKDEKRMSGDSISGADSSSGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEASGSSDALASTVSPLKKQRIDDGSKEGFTASQVRKNDNVGQLDPNLYDDAGFGFDLETKKDEDNESGQ*

>Glyma19g30220.5   sequence type=predicted peptide   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDPKDEKRMSGDSISGADSSSGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEASGSSDALASTVSPLKKQRIDDGSKEGFTASQVRKNDNVGQLDPNLYDDAGFGFDLETKKDEDNESGQ*

>Glyma19g30220.6   sequence type=predicted peptide   gene model=Glyma19g30220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVPGLTIYHVKSHLQKYRLAKYLPESPADDPKDEKRMSGDSISGADSSSGMPINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTTSETLPLSHDKQNHPQSEASGSSDALASTVSPLKKQRIDDGSKEGFTASQVRKNDNVGQLDPNLYDDAGFGFDLETKKDEDNESGQ*

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