Glyma19g30145 - SoyBase

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Report for Sequence Feature Glyma19g30145

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37810244
stop:	37814373
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30145

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26120	AT	Annotation by Michelle Graham. TAIR10: alpha-L-arabinofuranosidase 2 \| chr5:9121835-9125399 REVERSE LENGTH=674	SoyBase	E_val: 8.00E-136	ISS
GO:0046373	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
GO:0046556	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-N-arabinofuranosidase activity	SoyBase	N/A	ISS
PF06964	PFAM	Alpha-L-arabinofuranosidase C-terminus	JGI		ISS
UniRef100_Q7X9G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-L-arabinofuranosidase n=1 Tax=Malus x domestica RepID=Q7X9G7_MALDO	SoyBase	E_val: 2.00E-151	ISS
UniRef100_UPI0002339331	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339331 related cluster n=1 Tax=unknown RepID=UPI0002339331	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30145

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g30145 not represented in the dataset	Glyma19g30145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g30145 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g30145

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g30145

Limit To All Plant Sequences

>Glyma19g30145.1   sequence type=CDS   gene model=Glyma19g30145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTTTCTTTTAAGATTTTTCCTATTTACTTAACCTGCTTCATAGTGTGTTGCTTTGCAGAACAAACTTCAACCTTGATTGTTGATGCTAAGGGACCTACAAGAAAAATTCCAGACACTTTCCTTGGAGCATTTTTTGAGATCAATCATGCTGGCGCAGTGGCGCTGGGGGATTGTTTTGAAGCTGGAGCCTCTAGTGTTCCCTCAAATATTTATCCATGGTCTATTATTGGAGATGATTCAACCATATTCGTCTCAACTGATCGTACCTCTTGCTTTGATGAATCATTTCCTTGCCCATCGGGTGGTGTTGGCATCTCAAATCCTGGTTCTTGGGGCATGAATATTGAGAAAGGGCAGAAGTACCAAATAGTCTTCTATGCTAAAGCAGATGGTGCAATTAATCTAGACGTTTCATTTGTTGGATCGGAGAAAGGTGAAAAGTTGGCTTCAAATAACATTAGAGCTTATGGACATAATGTTACAAATTGGACAAGGATGGAGACTATATATGGTGGGTCTTATGTTGAAGGAGATTATTTAAGAAATGCATTTAGGTGGAAAGACACTTTAGCTGAGGATCTTGGTGCATTGCCAGTGTGGGTGTTTAACAATGGTATTAGCCATCACGATGAAGTTCGCCCGAATCAAGATGGGGGAGCTCTTAGGGCTTCCATGGGGCATCCTAAGCCATTTGACTTGAGAATTGTTACAATTGGAAATGAAGATTGTGGCAAGTTTAACTACAAAGGTATGAATCTTAAGTTTTATGGTGCCATAGAACGTGTTTATTCAGATATTCAGATTATCTCAAATTGTGATGGTTCCGAAAAATCGTTAGATCACCCGACTGATCTCTATGATTTTCATATTTATACAAAAGCCATGGACATGTTTTCCAAGTCTACTAAGTTTGATAATGTATCACGATATGGTCCAAAGGATGATGCCGGAAATGGAACACTTTTAGCTGCAGTGGCTGAAGCTGCATTCCTCATTGGACTAGAAAGGAATAGCTATGCACCACTCTTTGTAAACATGAATAATAGGAAGTGGACGCCAGATGCAATTGCATTTGACTCTTATCGGCACTATGAAACTCCCCATTATTGGGTTCAATATCTTTTTATTCCTTCGAGTGGGGTAACTTTGCTTAATTCAACACTCATCAGTTTTTCTAATAAATCTCTTGTTGCATCTGCAATTGAGTACACAAACTCTGCAGATAAGAAGAACTACCTGAGAATAAAGATAGCTGATTTGCTCACAGCGCCTAATGTAAGAGAAGAGAATTCCTTCTCAGAACCAAATAAGATTGTGCCACAACACACTCCACTTGAGGCTGCAAGTGGAGACATGAATGTCATACTTCCTCCTTACTCAGTTACATCGTTTGATTTATTAAAGTAG

Predicted protein sequences of Glyma19g30145

Limit To All Plant Sequences

>Glyma19g30145.1   sequence type=predicted peptide   gene model=Glyma19g30145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSFKIFPIYLTCFIVCCFAEQTSTLIVDAKGPTRKIPDTFLGAFFEINHAGAVALGDCFEAGASSVPSNIYPWSIIGDDSTIFVSTDRTSCFDESFPCPSGGVGISNPGSWGMNIEKGQKYQIVFYAKADGAINLDVSFVGSEKGEKLASNNIRAYGHNVTNWTRMETIYGGSYVEGDYLRNAFRWKDTLAEDLGALPVWVFNNGISHHDEVRPNQDGGALRASMGHPKPFDLRIVTIGNEDCGKFNYKGMNLKFYGAIERVYSDIQIISNCDGSEKSLDHPTDLYDFHIYTKAMDMFSKSTKFDNVSRYGPKDDAGNGTLLAAVAEAAFLIGLERNSYAPLFVNMNNRKWTPDAIAFDSYRHYETPHYWVQYLFIPSSGVTLLNSTLISFSNKSLVASAIEYTNSADKKNYLRIKIADLLTAPNVREENSFSEPNKIVPQHTPLEAASGDMNVILPPYSVTSFDLLK*

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