Glyma19g30120 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g30120

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37787001
stop:	37791162
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g30120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05080	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 22 \| chr5:1498727-1499972 REVERSE LENGTH=251	SoyBase	E_val: 3.00E-135	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0423	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF24	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_B9SCG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme e2S, putative n=1 Tax=Ricinus communis RepID=B9SCG2_RICCO	SoyBase	E_val: 2.00E-148	ISS
UniRef100_I1N8I4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8I4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g30120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g30120

Paralog	Evidence	Comments
Glyma03g00650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g30120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g121700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g30120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g30120

Limit To All Plant Sequences

>Glyma19g30120.3   sequence type=transcript   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTTCTGTGCCTCAAAGTTCCACCAATCAATCATTCATTCACTCCAAGGAGGGATCTCTCTCTCTCACTCCTTCTTCTCTCTCCTCTGGCACCCCTAAAGCTTCTTCTGTTCTGTGCAGGCAGTTTTTCTTTGGTTTGGTTGCATCCTTTGATCTGATCAGCAAATTTGAGAATTCAGTTTGGGAAGGGCCATTCCTCTTTAGTGCAAAACAGATCGCAGGTGCCTTTGTGCTGATGGTAAGCAATTGTTTTTGCTCATATGACTGGTGCTATCTTAATACAGATAATGTGTCATCAACCTGCCAGTTCATTATTCAATACTATTATTTGTCACGATTGTTTAATTCCATTTTGTTGGGGTGTTTAACATTCTTAGATTGTTATATGGTGCTTTTGTTTTAGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAATCTCCTCCCGAGGGCATTAAAGTTGTGGTAAATGATGATGATTTTTCGACAATATTTGCTGACATTGAAGGCCCAGGTAAGTAACTTTTATGTTTTTTGTTGTACGATTGAGCACTCGGCATTTGGTAATTCAACCGGAGTAATATATTTTTTCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCCCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTCCCAGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAGAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCCGAATCAACAACTGCTCTGAATGTTGATCAGACCAACACCTCTGTGATTAGTGGTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGTGCCAGTGCTTGCAACCACCACAACAAGAGGAAATAATCAGGAACAGGCAGCGGCTGTTAATGGTTCTTCTGCTGCTACAGTCATATCTGCTGCTTCTGCACCACCAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGCGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAAATCTTCAATCATTGAAGTTTTTTATTTGTGTTTTAGTTTTACATTTTGATAGAGAAAGAGGGGAGGGAGTGGGGATGTGGTCTCCTGGGTTCAACATTTGCTTTATAAAACGAGTGAGGTATTTTCTTTGGGAGTAAATGGATGAAATTGAACTTCTTGTTGTCTTTGAACTTGTGCTATGCTCTTTGCTAAAATATTGAACTTGTCCATAATACACCCTTATTACTGGCCCTTAGATTAATCAATTCTGGAATGCAAATTGTTCTGGAATGCAATATTGATCTTTTAGGGAAAGAATGCTCTTTCAGTAGGTGTTTTTTTACATAAATTCTGGAATGCAAATTGTTTGTGGTTTCTTCCATGTAAAGATTTCAGGAACTATGCCAAACAATTTTGGAAGTCTTTTGGGAAAGAACTTTGAAAATGGTGACATCAACGGCGCCTCCAACGGAGAGTGACGAAGACACCATCAGGGGATGTAGGAAAGGGAGGGAAAGTACAGAAAAGTGGAATGAGAACTAATAATAATGATGTATGGTGGACCACTCCTGAGAACTAATAACAGTGATGTATCGTAACACCTTAGTCTTCGTTTATTTTTGGATTCAACTCATTTATGAAAAATGTATGTTGGATTGGGATTGAAAATTTTCTTTTGTGATCTTGTGAATTGATTTAAGCTGAACTCTAGTTATGAACAAAAATCTAGCTGAATGTGAGGATTTTAAGCAATTTAAAGAAATTATGTCA

>Glyma19g30120.4   sequence type=transcript   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTTCTGTGCCTCAAAGTTCCACCAATCAATCATTCATTCACTCCAAGGAGGGATCTCTCTCTCTCACTCCTTCTTCTCTCTCCTCTGGCACCCCTAAAGCTTCTTCTGTTCTGTGCAGGCAGTTTTTCTTTGGTTTGGTTGCATCCTTTGATCTGATCAGCAAATTTGAGAATTCAGTTTGGGAAGGGCCATTCCTCTTTAGTGCAAAACAGATCGCAGGTGCCTTTGTGCTGATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAATCTCCTCCCGAGGGCATTAAAGTTGTGGTAAATGATGATGATTTTTCGACAATATTTGCTGACATTGAAGGCCCAGGTAAGTAACTTTTATGTTTTTTGTTGTACGATTGAGCACTCGGCATTTGGTAATTCAACCGGAGTAATATATTTTTTCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCCCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTCCCAGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAGAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCCGAATCAACAACTGCTCTGAATGTTGATCAGACCAACACCTCTGTGATTAGTGGTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGTGCCAGTGCTTGCAACCACCACAACAAGAGGAAATAATCAGGAACAGGCAGCGGCTGTTAATGGTTCTTCTGCTGCTACAGTCATATCTGCTGCTTCTGCACCACCAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGCGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAATAAAAATCTTCAATCATTGAAGTTTTTTATTTGTGTTTTAGTTTTACATTTTGATAGAGAAAGAGGGGAGGGAGTGGGGATGTGGTCTCCTGGGTTCAACATTTGCTTTATAAAACGAGTGAGGTATTTTCTTTGGGAGTAAATGGATGAAATTGAACTTCTTGTTGTCTTTGAACTTGTGCTATGCTCTTTGCTAAAATATTGAACTTGTCCATAATACACCCTTATTACTGGCCCTTAGATTAATCAATTCTGGAATGCAAATTGTTCTGGAATGCAATATTGATCTTTTAGGGAAAGAATGCTCTTTCAGTAGGTGTTTTTTTACATAAATTCTGGAATGCAAATTGTTTGTGGTTTCTTCCATGTAAAGATTTCAGGAACTATGCCAAACAATTTTGGAAGTCTTTTGGGAAAGAACTTTGAAAATGGTGACATCAACGGCGCCTCCAACGGAGAGTGACGAAGACACCATCAGGGGATGTAGGAAAGGGAGGGAAAGTACAGAAAAGTGGAATGAGAACTAATAATAATGATGTATGGTGGACCACTCCTGAGAACTAATAACAGTGATGTATCGTAACACCTTAGTCTTCGTTTATTTTTGGATTCAACTCATTTATGAAAAATGTATGTTGGATTGGGATTGAAAATTTTCTTTTGTGATCTTGTGAATTGATTTAAGCTGAACTCTAGTTATGAACAAAAATCTAGCTGAATGTGAGGATTTTAAGCAATTTAAAGAAATTATGTCA

Coding sequences of Glyma19g30120

Limit To All Plant Sequences

>Glyma19g30120.2   sequence type=CDS   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTAATGAAAATCTTCCACCAAATGTAATTAAGCAACTTGCCAAGGAGTTGAAAAATCTTGATGAATCTCCTCCCGAGGGCATTAAAGTTGTGGTAAATGATGATGATTTTTCGACAATATTTGCTGACATTGAAGGCCCAGCTGGAACTCCTTATGAGAATGGAGTTTTCCGAATGAAGCTGTTGCTGTCCCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTCCCAGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAGAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCCGAATCAACAACTGCTCTGAATGTTGATCAGACCAACACCTCTGTGATTAGTGGTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGTGCCAGTGCTTGCAACCACCACAACAAGAGGAAATAATCAGGAACAGGCAGCGGCTGTTAATGGTTCTTCTGCTGCTACAGTCATATCTGCTGCTTCTGCACCACCAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGCGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma19g30120.3   sequence type=CDS   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTGTTGCTGTCCCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTCCCAGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAGAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCCGAATCAACAACTGCTCTGAATGTTGATCAGACCAACACCTCTGTGATTAGTGGTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGTGCCAGTGCTTGCAACCACCACAACAAGAGGAAATAATCAGGAACAGGCAGCGGCTGTTAATGGTTCTTCTGCTGCTACAGTCATATCTGCTGCTTCTGCACCACCAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGCGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

>Glyma19g30120.4   sequence type=CDS   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTGTTGCTGTCCCATGATTTCCCGCATTCTCCACCTAAAGGTTTTTTCTTGACTAAGATTTTCCATCCAAACATTGCAACCAATGGAGAGATTTGTGTCAACACACTTAAAAAGGATTGGAATCCTAGCCTTGGGTTACGGCATGTTCTTATTGTTGTTAGGTGTCTATTGATTGAACCATTCCCAGAATCAGCTCTAAATGAACAGGCTGGCAAAATGCTGCTTGAGAATTATGAGGAGTATGCTAGACATGCTAGGCTTTACACTGGAATCCATGCAAAACCAAAGCCCAAATTCAAGAGCGGAGCTATATCCGAATCAACAACTGCTCTGAATGTTGATCAGACCAACACCTCTGTGATTAGTGGTGACATCAAAACCACACCGGCGAGTGCTGCATTGCCAGTGCCAGTGCTTGCAACCACCACAACAAGAGGAAATAATCAGGAACAGGCAGCGGCTGTTAATGGTTCTTCTGCTGCTACAGTCATATCTGCTGCTTCTGCACCACCAAAGAAGGAAGGTGGACAAGCAAAAGCTCAGGCGGACAAGAAGAAGATAGATGCCAGAAAGAAAAGTTTGAAAAGATTGTAA

Predicted protein sequences of Glyma19g30120

Limit To All Plant Sequences

>Glyma19g30120.2   sequence type=predicted peptide   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATNENLPPNVIKQLAKELKNLDESPPEGIKVVVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISGDIKTTPASAALPVPVLATTTTRGNNQEQAAAVNGSSAATVISAASAPPKKEGGQAKAQADKKKIDARKKSLKRL*

>Glyma19g30120.3   sequence type=predicted peptide   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISGDIKTTPASAALPVPVLATTTTRGNNQEQAAAVNGSSAATVISAASAPPKKEGGQAKAQADKKKIDARKKSLKRL*

>Glyma19g30120.4   sequence type=predicted peptide   gene model=Glyma19g30120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLLSHDFPHSPPKGFFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARLYTGIHAKPKPKFKSGAISESTTALNVDQTNTSVISGDIKTTPASAALPVPVLATTTTRGNNQEQAAAVNGSSAATVISAASAPPKKEGGQAKAQADKKKIDARKKSLKRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain