Glyma19g29990 - SoyBase

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Report for Sequence Feature Glyma19g29990

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37694309
stop:	37700853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03610	AT	Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein \| chr3:869479-871687 FORWARD LENGTH=323	SoyBase	E_val: 2.00E-169	ISS
GO:0006909	GO-bp	Annotation by Michelle Graham. GO Biological Process: phagocytosis	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005856	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12771	Panther	ENGULFMENT AND CELL MOTILITY	JGI		ISS
PTHR12771:SF3	Panther	ELMO1	JGI		ISS
PF04727	PFAM	ELMO/CED-12 family	JGI		ISS
UniRef100_G7L2P5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein A n=1 Tax=Medicago truncatula RepID=G7L2P5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N8H5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8H5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29990

Paralog	Evidence	Comments
Glyma03g00740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g29990

Limit To All Plant Sequences

>Glyma19g29990.5   sequence type=transcript   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACACTAAGCTAAAATACAGCAGAATGCCCAATTTGACACAGGACTATAAATTCCTTTTTCATGGAAGCAAGAATTGGGAGTTTCATTTTCGTTCAATTATTTCTCCCCTTTTCTTAAAATCGAATTGAATCGAATCCTTCACAAGTCAAGAGTTAGCACACCCAAAAGAACGCGTTTCAGCTGGCCACACTGTTGATTTGGCTGACACATAGTAAAGAATCATATTAATGTCGTCAAGAACATTGAGGAGAAGACTCTATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTGGATTCTTTGAGTGAGCCCTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCTAAGCCCTCTGCAGGAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTTGTCCGGAATTCGTTTTCTCAAATTGCTTGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAGACATCTTCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGATTGACAATTGCCTTTCAGTTCAACATTTCTCTTCCTTTTTTTTTTGTTTCTTTTGGCGGAGAATGTTACATGAAATGTATCTAAAGCATTTGTCATTTTATCTCTATATAGAAACGTGAAAATCAAATATCAGATCAATCTTTCTGCTGATTTCCATCACCTTTGTATTTAAGCGTGTATTAGCATTTAGGAAATTCTTCATAAAATTTATCGTCGCACTAATTACTATAAGTCTATCATGCCAAGTATGACAGCTTGAGTGTGGATCCAGTCTCCCTATTTTATAATTGAAGATGATAATTTCATACCAAAATATGCAAGCTACTTTTGTGCCAATAATCAATCTGTAATTATGTAAATAATCAGCTTCATGGGCTTCGTTTTTAGTGGTTTTAAGTAG

>Glyma19g29990.6   sequence type=transcript   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACACTAAGCTAAAATACAGCAGAATGCCCAATTTGACACAGGACTATAAATTCCTTTTTCATGGAAGCAAGAATTGGGAGTTTCATTTTCGTTCAATTATTTCTCCCCTTTTCTTAAAATCGAATTGAATCGAATCCTTCACAAGTCAAGAGTTAGCACACCCAAAAGAACGCGTTTCAGCTGGCCACACTGTTGATTTGGTGTTTTTAAGAGCCCCCAATTCTGTTGATTCGCAATTCAAATTATTCGTCTCGCTCTCAATAGAGAAGAAAAAAAAAACTGCGTTTTTCAAATCGGTAAATTGGCTGACACATAGTAAAGAATCATATTAATGTCGTCAAGAACATTGAGGAGAAGACTCTATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTGGATTCTTTGAGTGAGCCCTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCTAAGCCCTCTGCAGGAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTTGTCCGGAATTCGTTTTCTCAAATTGCTTGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAGACATCTTCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGATTGACAATTGCCTTTCAGTTCAACATTTCTCTTCCTTTTTTTTTTGTTTCTTTTGGCGGAGAATGTTACATGAAATGTATCTAAAGCATTTGTCATTTTATCTCTATATAGAAACGTGAAAATCAAATATCAGATCAATCTTTCTGCTGATTTCCATCACCTTTGTATTTAAGCGTGTATTAGCATTTAGGAAATTCTTCATAAAATTTATCGTCGCACTAATTACTATAAGTCTATCATGCCAAGTATGACAGCTTGAGTGTGGATCCAGTCTCCCTATTTTATAATTGAAGATGATAATTTCATACCAAAATATGCAAGCTACTTTTGTGCCAATAATCAATCTGTAATTATGTAAATAATCAGCTTCATGGGCTTCGTTTTTAGTGGTTTTAAGTAG

Coding sequences of Glyma19g29990

Limit To All Plant Sequences

>Glyma19g29990.4   sequence type=CDS   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCAAGAACATTGAGGAGAAGACTCTATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTGGATTCTTTGAGTGAGCCCTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCTAAGCCCTCTGCAGGAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTTGTCCGGAATTCGTTTTCTCAAATTGCTTGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAGACATCTTCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGA

>Glyma19g29990.5   sequence type=CDS   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCAAGAACATTGAGGAGAAGACTCTATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTGGATTCTTTGAGTGAGCCCTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCTAAGCCCTCTGCAGGAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTTGTCCGGAATTCGTTTTCTCAAATTGCTTGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAGACATCTTCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGA

>Glyma19g29990.6   sequence type=CDS   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCAAGAACATTGAGGAGAAGACTCTATCATGGGGATGTTGATGGCAAAAGGCAGGAGCATTTGGAGACTTCGGGATTGGATTCTTTGAGTGAGCCCTTGCTGGCAGACGATGATTATATTGAGAATAAGAAGATATGTACTCTTGAAGATCTATGGGATGATGAGAAGAAGAAGGCGCAGTTTCATTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCTAAGCCCTCTGCAGGAAGAAAGACTAAGAAATCTACGACAACGGCTTGAAGTTCCCTTTGATGGTTCTAAAGCAGAGCACCAAGACGCACTTAAACAATTGTGGAAATTGGCTTACCCGGACAGGGAGCTTCCTTCACTTAAATCAGACCTTTGGAAGGAAATGGGATGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGAGGATTTATTTCATTAGAGAATCTCATCTTCTTTGCGATGAAGTATCCTGATTCATTCCAGCGATTATTGCATAAACAAGATGGAACCAGAGCTGAGTGGGAATACCCATTTGCAGTAGCTGGAATCAATATTTCTTTTATGTTAGCACAGATGCTGGATCTTCAAGCAGGGCTTCCATCTTCTTTGTCCGGAATTCGTTTTCTCAAATTGCTTGAAGAAGATGAAATGGCATTTGATATCCTTTTTTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTAGCAAAGCGTGCGTCATATATGGAATTTAATGATGTTTTGAGATCCACAAGAACGCAGTTAGAGCGTGAGCTTGGTCTTGAAGACATCTTCAGCGTGAAAGATTTACCTGCTTACAACATGTTGAGATGA

Predicted protein sequences of Glyma19g29990

Limit To All Plant Sequences

>Glyma19g29990.4   sequence type=predicted peptide   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRTLRRRLYHGDVDGKRQEHLETSGLDSLSEPLLADDDYIENKKICTLEDLWDDEKKKAQFHWTFIFSNLIVQWAQWLANLVLGSGSILGRLLSFPSAALNMQNNRMFPPSLSPLQEERLRNLRQRLEVPFDGSKAEHQDALKQLWKLAYPDRELPSLKSDLWKEMGWQGSDPSTDFRGGGFISLENLIFFAMKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQAGLPSSLSGIRFLKLLEEDEMAFDILFCVAFQMMDAQWLAKRASYMEFNDVLRSTRTQLERELGLEDIFSVKDLPAYNMLR*

>Glyma19g29990.5   sequence type=predicted peptide   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRTLRRRLYHGDVDGKRQEHLETSGLDSLSEPLLADDDYIENKKICTLEDLWDDEKKKAQFHWTFIFSNLIVQWAQWLANLVLGSGSILGRLLSFPSAALNMQNNRMFPPSLSPLQEERLRNLRQRLEVPFDGSKAEHQDALKQLWKLAYPDRELPSLKSDLWKEMGWQGSDPSTDFRGGGFISLENLIFFAMKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQAGLPSSLSGIRFLKLLEEDEMAFDILFCVAFQMMDAQWLAKRASYMEFNDVLRSTRTQLERELGLEDIFSVKDLPAYNMLR*

>Glyma19g29990.6   sequence type=predicted peptide   gene model=Glyma19g29990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRTLRRRLYHGDVDGKRQEHLETSGLDSLSEPLLADDDYIENKKICTLEDLWDDEKKKAQFHWTFIFSNLIVQWAQWLANLVLGSGSILGRLLSFPSAALNMQNNRMFPPSLSPLQEERLRNLRQRLEVPFDGSKAEHQDALKQLWKLAYPDRELPSLKSDLWKEMGWQGSDPSTDFRGGGFISLENLIFFAMKYPDSFQRLLHKQDGTRAEWEYPFAVAGINISFMLAQMLDLQAGLPSSLSGIRFLKLLEEDEMAFDILFCVAFQMMDAQWLAKRASYMEFNDVLRSTRTQLERELGLEDIFSVKDLPAYNMLR*

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