Glyma19g29880 - SoyBase

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Report for Sequence Feature Glyma19g29880

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37595310
stop:	37621482
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g29880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74040	AT	Annotation by Michelle Graham. TAIR10: 2-isopropylmalate synthase 1 \| chr1:27842258-27845566 FORWARD LENGTH=631	SoyBase	E_val: 0	ISS
GO:0009098	GO-bp	Annotation by Michelle Graham. GO Biological Process: leucine biosynthetic process	SoyBase	N/A	ISS
GO:0019752	GO-bp	Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0003852	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2-isopropylmalate synthase activity	SoyBase	N/A	ISS
GO:0046912	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	SoyBase	N/A	ISS
KOG2367	KOG	Alpha-isopropylmalate synthase/homocitrate synthase	JGI		ISS
PTHR10277	Panther	ISOPROPYLMALATE SYNTHASE RELATED	JGI		ISS
PTHR10277:SF9	Panther	2-ISOPROPYLMALATE SYNTHASE-RELATED	JGI		ISS
PF00682	PFAM	HMGL-like	JGI		ISS
PF08502	PFAM	LeuA allosteric (dimerisation) domain	JGI		ISS
UniRef100_D0VY45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homocitrate synthase n=1 Tax=Lotus japonicus RepID=D0VY45_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1N8G9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8G9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g29880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g29880

Paralog	Evidence	Comments
Glyma03g00800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g29880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g120400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g29880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g29880

Limit To All Plant Sequences

>Glyma19g29880.1   sequence type=CDS   gene model=Glyma19g29880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCAAAACATCTACCAACGGCACTCATTATTCTCGCTCTCGCCCCGAGTACATTCCAAACCGCATCCCCGACCCGCATTATGTCCGCATCCTGGACACCACGCTTCGCGACGGCGAGCAAGCCCCCGGAGCCTCCATGGTTTCCAGCCAGAAGCTTGCTCGCCAGCTCGCGAAGCTTGGCGTCGATGTCATCGAAGGAGGCTTTCCTTCAGCGTCGCAGGAAGACTTCAATGCTGTCAAGATGATAGCACAAGAAGTTGGCAACAACTGTGATGCTGATGGCTATGTTCCCGTCATTGCCGCCCTCTGTAGGTGCAATGAGAAGGACATTGCCACAGCGTGGGAGGCTCTGAAATACGCCAAGAGGCCGAGGCTTATGCCTTTCATAGCAGTGAGCCCCATTCACATGGAGTACAAGCTCAATAAGACTAAAGAAGAGGTGCTTCAAATAGCTAAAGATATGATCAAATTTGCACGCAGTTTAGGTTGCAGTGACATCCAGTTCTGTTCCGAAGATGCAGCCAGATCGGATAGAGAGTTTCTTTATCAAATTTTGGAAGAAGTTATCAAAGCTGGGGCAACAACTTTGGGCATAGGTGACACTGTGGGCATAACAATGCCATTCGAGATTAGACAATTGATTGCTGATATAAAAGCCAATGTCCCTGGAGCAGAAAATGTTATTATTTCTATGCACTGTCATAATGATCTTGGACATGCTACTGCAAACGCAATAGAGGCTGCTCAAGCTGGTGCAATGCAATTAGAAGTAACAATTAATGGGATTGGTGAAAGGGCTGGTAATGCCTCATTAGAAGAGGTTGTGATGGCCCTAAAATGCAGGGGAGATCAAGTCTTAGGTGGTTTGTATACTGGAATTAATACAAGGCACTTATTGAAGACAAGCAAGATGGTCGAAGAGTTTTCTGGTATGTATTTACAACCACACAAAGCTGTTGTAGGTGATAATGCCTTTCTCCATGAAAGTGGCGTTCACCAGGCTGGATTGTTAAAGCATAGAGCTACATATGAAATAATGTCTCCCGAAGATATTGGTCATGAAAAGTCCAGTGGAGTTAATATGGTACTAGGGAAGCTAAGTGGACGCCAAGCTTTGAAAAGTCGTCTCAAAGAGCTTGGCTATGAACTTAGGGATGAAGAAGTTGAGAGTGTGTTTAGGAACTTCAAAGCAATAGCCGAGAAAAAAAAGAGAGTTACCGATGTTGACCTCAAAGCATTGGTGTCAAATCAAGTTTCTCATGATGAACCTATTTGGAAGCTTGATGGTTTGCAGGTGACTTGTGGAACTATGGGTTCTTCAACAGCAACTATCAAACTTGTCACTAGTGATGGTATCACACATGTTGCTTGTTCTGTTGGTGTAGGACCAGTAGATTCAGCTTACAAGGCTATCAATCTCATCGTGAAGGAAACTGTAAAAGTACTTGAGTACTCACTAAGTACAGTTACAGAAGGCACTGATGCAATTGCAACTACACGTGTTGTAATTCGTAGAGAGAATAAGCAATCACCAACTCCTGCTTTGAATGGAAACGTAATTTATCCAACATTTAGTGGAACCGGAGAAGGGGTGGATGTTGTTACTTCAAGTGTAGAGGCTTATCTTACTGCACTAAACAAAATGCTCGATTTAAAGGAATGA

Predicted protein sequences of Glyma19g29880

Limit To All Plant Sequences

>Glyma19g29880.1   sequence type=predicted peptide   gene model=Glyma19g29880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAKTSTNGTHYSRSRPEYIPNRIPDPHYVRILDTTLRDGEQAPGASMVSSQKLARQLAKLGVDVIEGGFPSASQEDFNAVKMIAQEVGNNCDADGYVPVIAALCRCNEKDIATAWEALKYAKRPRLMPFIAVSPIHMEYKLNKTKEEVLQIAKDMIKFARSLGCSDIQFCSEDAARSDREFLYQILEEVIKAGATTLGIGDTVGITMPFEIRQLIADIKANVPGAENVIISMHCHNDLGHATANAIEAAQAGAMQLEVTINGIGERAGNASLEEVVMALKCRGDQVLGGLYTGINTRHLLKTSKMVEEFSGMYLQPHKAVVGDNAFLHESGVHQAGLLKHRATYEIMSPEDIGHEKSSGVNMVLGKLSGRQALKSRLKELGYELRDEEVESVFRNFKAIAEKKKRVTDVDLKALVSNQVSHDEPIWKLDGLQVTCGTMGSSTATIKLVTSDGITHVACSVGVGPVDSAYKAINLIVKETVKVLEYSLSTVTEGTDAIATTRVVIRRENKQSPTPALNGNVIYPTFSGTGEGVDVVTSSVEAYLTALNKMLDLKE*

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