SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33110 | AT | Annotation by Michelle Graham. TAIR10: MATE efflux family protein | chr1:12005084-12008618 FORWARD LENGTH=494 | SoyBase | E_val: 0 | ISS |
| GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015238 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015297 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antiporter activity | SoyBase | N/A | ISS |
| KOG1347 | KOG | Uncharacterized membrane protein, predicted efflux pump | JGI | ISS | |
| PTHR11206 | Panther | MULTIDRUG RESISTANCE PUMP | JGI | ISS | |
| PTHR11206:SF9 | Panther | MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED | JGI | ISS | |
| PF01554 | PFAM | MatE | JGI | ISS | |
| UniRef100_G7L2P0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7L2P0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N8G7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N8G7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g29860 not represented in the dataset |
Glyma19g29860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g120200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g29860.1 sequence type=CDS gene model=Glyma19g29860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGGAAGAGGAGCTAAAGGAGACGCTTATGCATCATCCAAACAACACTTCTTTGGAGAGTGTTGAAAAGGAAGAGTCATTGAGGAAAAGGGCATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCAGGCCCCGCCATATTCACAAGGTTTTCAACGTTTGGAATCATGGTGGTTAGTCAATCCTTCATTGGGCATATTGGCTCAACTGAACTAGCTGCCTATGCCATTGTTATGACTGTCCTAGTCAGGTTTGCAAATGGTGTATTGATTGGAATGGCAAGTGCATTGGATACTCTTTGTGGGCAAGCATATGGGGCCAAAAAATATGACATGCTAGGAGTGTATCTTCAAAGATCATGGATAGTGTTGTTCATGACCTCAATACTCCTTCTTCCTATTTACATCTTTACCACTCCTTTGTTAGAGGCTCTAGGCCAAGATAAAACCATTGCTCAAGTTGCTGGAAGCATTTCTCTGTGGTCAATAGGTATAATATTTGCTTTCTCTGTCTCATTCACCAGCCAAATGTTCCTACAATCACAGAGCAAGAACAAGATCATTGCCTACCTTGCAGCAGTTTCAATTTCAATTCATGTTTTGTTGTCATGGGTTTTAACTGTTCAGTTCAAGTTTGGGCTCAACGGTGCAATGACATCAACACTTTTAGCATATTGGATTCCTAACATTGGCCAGCTTGTGTTTATAATGACTAAGTGCCCTGACACATGGAAAGGTTTCTCATTCTTGGCCTTCAAAGATCTTTTGCCTGTTATCAAGCTTTCCCTCTCTTCTGGAGCTATGTTATGTCTTGAGATCTGGTACAACACTGTTTTGATTCTTCTTACAGGCAACATGAAAAATGCTGAAGTGTCTATTGATGCTCTGGCCATATGCCTCAACATTAGTGGGTGGGAAATGATGATAGCCCTTGGTTTCTTTGCTGCAGCAAGCGTCCGAGTGGCAAATGAGCTTGGAAGAGGGAATTCAAAGGCTACAAAATTTTCCATTCTGATAACAGTCCTCACATCATTTTCCATTGGATTCGTGTTATTCTTGGTGTTCCTATTTCTGAGGGGAAAACTTGCTTACATTTTCACTCCAGACCCTGAGGTTGCTAAAGCTGTTGGCGATTTATCACCATTGCTCTCATTTTCCTTCTTGTTGAACAGTGTCCAACCTGTGCTTTCTGGAGTTTCTGTGGGTGCTGGGTGGCAAAGCGTTGTAGCATATGTAAACATAGGCTGCTATTATCTTATTGGTATTCCTGTTGGAGTGCTGCTTGATAATCTTTTCCATTTGGAAGTTAAGGGTATTTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTAATGCTTATTACAATCACATTTAAAACTGATTGGGACAAGCAGGTAGAGATAGCTCGAAATCGTGTTAACAAATGGGCAGTGACGACGGAGAACGAAGAATCAAACAGTAGATCAAGCATATCTAGCTAG
>Glyma19g29860.1 sequence type=predicted peptide gene model=Glyma19g29860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMEEELKETLMHHPNNTSLESVEKEESLRKRAWEESKKMWVVAGPAIFTRFSTFGIMVVSQSFIGHIGSTELAAYAIVMTVLVRFANGVLIGMASALDTLCGQAYGAKKYDMLGVYLQRSWIVLFMTSILLLPIYIFTTPLLEALGQDKTIAQVAGSISLWSIGIIFAFSVSFTSQMFLQSQSKNKIIAYLAAVSISIHVLLSWVLTVQFKFGLNGAMTSTLLAYWIPNIGQLVFIMTKCPDTWKGFSFLAFKDLLPVIKLSLSSGAMLCLEIWYNTVLILLTGNMKNAEVSIDALAICLNISGWEMMIALGFFAAASVRVANELGRGNSKATKFSILITVLTSFSIGFVLFLVFLFLRGKLAYIFTPDPEVAKAVGDLSPLLSFSFLLNSVQPVLSGVSVGAGWQSVVAYVNIGCYYLIGIPVGVLLDNLFHLEVKGIWIGMLFGTFVQTVMLITITFKTDWDKQVEIARNRVNKWAVTTENEESNSRSSISS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
